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Name : HPSJM_07550 (HPSJM_07550) Accession : YP_003929383.1 Strain : Helicobacter pylori SJM180 Genome accession: NC_014560 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : 6.1.1.11 Position : 1520907 - 1522154 bp Length : 1248 bp Strand : - Note : COG0172 Seryl-tRNA synthetase DNA sequence : ATGATTGATAGAAAACTTTTATTGCAAGATTTTGATAAGGTGGCTCTTTCTTTAAAAAAGCGTAATAATGCGATGGATGA TGAGTTGGAGCGTTTGCACGAAGCCATCACGCATTATAAAAAGCAGCTCATTGAATTAGAAGGCTTGCAAGCCTTTCAAA ACAAGGTTTCTAAAGAATTTGGCATCAAGATGGCTCAAAAAGCGGATACAAGCGATCTCAAAAAAGAGCTAGAAAACAAT AAAATCAAATTGAATGAGCTTTCTAAAAGCGTGGACGAATTGGAGCAACAAATTGATTTAAAGCTTTCCATAATCCCTAA TTTAGTGGATGAAAAAACCCCCTTAGGCGCGAATGAAGAAGACAACATAGAAATTAAAAAAATCCTAACCCCAAGAAATT TTACTTTCAAACCTAAAGAGCATTTTGAACTCGCCCAAAAAAACGGCTGGATTGATTTTGAAAGCGGCGTGAAACTCGCC AAAAGCCGCTTTTCTGTCATTAGGGGTTTTGGGGCGAAAATTTATCGCGCGCTCATTCATTTAATGCTGGATTTTAATGA AAAAAATGGCTTTGAAATCATCTACACGCCGGCGTTAGTGAATGAAAAAATGCTTTTTGGGACCGGGCAATTACCCAAAT TCAAAGAAGACGTTTTCAAAATAGAAAATGAAAATTTGTATCTGATCCCCACCGCTGAAGTAACGCTCACCAATTTATAC AACGACACCATTATCAGCGTTGAAAACCTCCCCATTAAAATGACCGCGCACACGCCTTGTTTTAGGAGCGAAGCAGGGAG CGCGGGCAAGGATACAAGGGGGATGATAAGACAACACCAGTTTGATAAAGTAGAGCTAGTGGCTATCACGCACCCTAAAG AAAGCGATGCGATGCAAGAGTGCATGCTAGAGAGCGCGAGCGAGATTTTAAAGGCTTTGGAATTACCGCACCGGTTCGTG CAATTGTGCAGCGCGGATTTAGGCTTTAGCGCGAGCAACACGATAGATATTGAAGTGTGGCTGCCCGGGCAAAATTGCTA CCGAGAAATCAGCTCCGTGTCTAACACGAGGGATTTTCAAGCCAGGCGTGCCAAAATCCGCTTCAAAGAAAATCAAAAAA ACCAGTTAGTGCACACCTTAAACGGCTCTTCTTTAGCGGTAGGCAGGACGATGGTCGCTTTAATGGAAAACCACCAGCAA GCGGATGGGAGCATCCATATTCCTAAGGCGTTAGAAAAATACCTTTAA Protein sequence : MIDRKLLLQDFDKVALSLKKRNNAMDDELERLHEAITHYKKQLIELEGLQAFQNKVSKEFGIKMAQKADTSDLKKELENN KIKLNELSKSVDELEQQIDLKLSIIPNLVDEKTPLGANEEDNIEIKKILTPRNFTFKPKEHFELAQKNGWIDFESGVKLA KSRFSVIRGFGAKIYRALIHLMLDFNEKNGFEIIYTPALVNEKMLFGTGQLPKFKEDVFKIENENLYLIPTAEVTLTNLY NDTIISVENLPIKMTAHTPCFRSEAGSAGKDTRGMIRQHQFDKVELVAITHPKESDAMQECMLESASEILKALELPHRFV QLCSADLGFSASNTIDIEVWLPGQNCYREISSVSNTRDFQARRAKIRFKENQKNQLVHTLNGSSLAVGRTMVALMENHQQ ADGSIHIPKALEKYL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 8e-77 | 46 |
