Gene Information

Name : HPPC_04955 (HPPC_04955)
Accession : YP_003927257.1
Strain : Helicobacter pylori PeCan4
Genome accession: NC_014555
Putative virulence/resistance : Unknown
Product : IS606 transposase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0675
EC number : -
Position : 1002743 - 1004041 bp
Length : 1299 bp
Strand : -
Note : COG0675 Transposase and inactivated derivatives

DNA sequence :
TTGTACCCCACTAAAGAACAAGAAAGCAAACTGCAACATTGTTTTTTTGTCTATAACCAAGCCTATAACATCGGCTTGAA
TTTGCAACAAGAGCAGTATGAAAAGAATAAAGATTTACCTCCAAAAGAAAGAAAATGGAAAAAATCAAGCGAGTTAGATC
ATGCGATCAAACAATGCCTAAGAGCTAGAGATTTACCCTTTAGCTCTGTGATAGCCAAACAATCACGCATGAATGTTGAA
AGGGCTTTTAAAGACGCTTTTAAGGTTAAGAACAGGGGCTTTCCTAAATTCAAAAACTCCAAATTCGCCAAACAATCTTT
TTCTTGGAACAATCAAGGCTTCTCTTTCAAAGAAAGCGCTGATGAACGCTTCAAGATATTCACCCTCATGAAAATGCCCT
TGCTTTTGCGCATGCACAGAGATCCCCCCCCTAACGCTAAAATCAAGCAAATTACAATCTCTTGCAGCCACAGAAAATAT
TTTGTTAGCTTTAGCGTGGAATACGAACAAAACATTGCTACCATCAAAAATCCTAAAGATTGTGTGGGGCTAGATTTGAA
TATTCTTGACATCGCTTGTTCTTGTGGTGTGAATAACCCTGAAAAACTCACTGATTTTAAGCGCTACCTTTTAGACATGG
AAGAATTGCTAGGGATAAAGTTGGATGCAAAAACTCACGCAACACAGCTTATTCCCACTTATTCCAAACTGCATTCTTTA
AAAAAATACTCCAAAAAATCTAAAAAATTGCAAAGAAAACAGAGCCGCAGGGTTTTAAAATCCAAACAGAACAAAACCAA
ATTAGGAGGTAATTTTTACCAAACGCAAAAGAGATTGAACCAAGCCTTTGACAAGTCTAGTCATCAAAAAACAGACCGAT
ACCATAAAATCACAAGCGAACTTTCAAAGCAATTTGAATTGATAGCAGTTGAAGACTTGCAAGTAAAGAACATGACTAAA
AGAGCCAAGCTCAAAAATGTTAAACAAAAGAGTGGGCTTAATCGATCTATTCTCAACACTTCATTCTATCAAATCATCTT
CTTTTTAGACTATAAACAACAGCATAATGGCAAATTGTTAGTGAAAGTTCCCCCACAATACACGAGCAAGACTTGCTATA
ATTGTGGGAGCATCAACCCCAAGCTCAAATTGAATCACAGGCAATATTTGTGTTCTGATTGTGGGTATAAAGAACACAGA
GATATTAACGCTGCGAACAACATCTTGAATAAAGGGTTAAGTCTTTTTAGGGCAGGAAATGTCCTTGCAGACTTTAAAGA
ACAAAGCCTTTCGTGTTAG

Protein sequence :
MYPTKEQESKLQHCFFVYNQAYNIGLNLQQEQYEKNKDLPPKERKWKKSSELDHAIKQCLRARDLPFSSVIAKQSRMNVE
RAFKDAFKVKNRGFPKFKNSKFAKQSFSWNNQGFSFKESADERFKIFTLMKMPLLLRMHRDPPPNAKIKQITISCSHRKY
FVSFSVEYEQNIATIKNPKDCVGLDLNILDIACSCGVNNPEKLTDFKRYLLDMEELLGIKLDAKTHATQLIPTYSKLHSL
KKYSKKSKKLQRKQSRRVLKSKQNKTKLGGNFYQTQKRLNQAFDKSSHQKTDRYHKITSELSKQFELIAVEDLQVKNMTK
RAKLKNVKQKSGLNRSILNTSFYQIIFFLDYKQQHNGKLLVKVPPQYTSKTCYNCGSINPKLKLNHRQYLCSDCGYKEHR
DINAANNILNKGLSLFRAGNVLADFKEQSLSC

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tnpB AAR03857.1 transposase B-like protein Not tested cag PAI Protein 4e-159 85
tnpA CAJ31329.1 insertion sequence IS606 transposase homolog A Not tested cag PAI Protein 3e-156 84