Gene Information

Name : HPPC_02660 (HPPC_02660)
Accession : YP_003926820.1
Strain : Helicobacter pylori PeCan4
Genome accession: NC_014555
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein (cagN, cag17)
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 524450 - 525361 bp
Length : 912 bp
Strand : +
Note : -

DNA sequence : 
TTGAAAAGTATCTTCAAAAAACTAGGTTCTGTCGCTCTTTATTTTTTAGTTATTTATGGGGGCTTAAACGCTATCAATAC
AGCATTATTACCGAGTGAATACAAAAAATTAGTGGCTTTAGGCTTTAAAAAACTCTATCAAAGACATGACGACAAAGAAG
TTACAGAAGAGGAAAAAAAATTCGCCACTAACGCTTTGAGAGAAAAATTACGAAATGATAGGGCGAGAGCGGAGCAAATT
CAAAAAAATATTGAAGCGTTTGAAAAAAAGAACAACTCTTCTATTCAAAAAAAAGCGACTAAGCACAAAGGATTACAAGA
ATTAAACGAAACTAACGCTAACCCTTTGAATGGCAATCCTAATAGTAATTCTTCCACTGAAACCAAATCTAATAAAGATG
ATAACTTTGATGAGATGATCAATAAGGTGAATGAAGCTTTTGTGAAACCTGCTACTCCGCTTGTGCCTAATGAGTGGAGA
ACGCCTGAAATTGAAACCATTATCAATGAGTGCATTATTTCAAGCAACGATTACGATGGGTTAAGGAAGTGTTTGATCAA
AGGCATCAAGGATCAAAAAATTCTTGCCCCCTTATTAGAAAAAATTCAAGAAATAGAGACAGAAAATAACAAGTTTTCTA
GACAACACTTGAGTGGTTTAAAGCTCGCTCTTAATAACAGCAACAATAGAACCTTTCTTATAGCTTCGTGTGCTATTTGT
GAGAAGAGAAAAAAAGAAATGGAGCAAGAAAATAACTACCAAGATACTACAAATACAAGCGAGTTTGGAGCTACTGATAC
AAAAGAAAATGAAGCAAAAGATGCAACATTCTCAAACAATCGCTCTAAATCCGAACTGCCCAATAGCGTCATTAATCAAA
TAGAACAAAGCATCGCTCATGGAAAAAAATAG

Protein sequence : 
MKSIFKKLGSVALYFLVIYGGLNAINTALLPSEYKKLVALGFKKLYQRHDDKEVTEEEKKFATNALREKLRNDRARAEQI
QKNIEAFEKKNNSSIQKKATKHKGLQELNETNANPLNGNPNSNSSTETKSNKDDNFDEMINKVNEAFVKPATPLVPNEWR
TPEIETIINECIISSNDYDGLRKCLIKGIKDQKILAPLLEKIQEIETENNKFSRQHLSGLKLALNNSNNRTFLIASCAIC
EKRKKEMEQENNYQDTTNTSEFGATDTKENEAKDATFSNNRSKSELPNSVINQIEQSIAHGKK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0538 BAD13981.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-114 97
HP0538 BAD13844.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-107 96
HP0538 BAD13817.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-107 96
HP0538 BAD14063.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-108 96
HP0538 BAD13954.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-108 96
cag17 AAR03961.1 Cag17 Virulence cag PAI Protein 1e-113 96
HP0538 ABC25004.1 cag pathogenicity island protein N Virulence cag PAI Protein 5e-107 95
HP0538 NP_207334.1 cag pathogenicity island protein (cag17) Virulence cag PAI Protein 6e-111 95
cagN YP_005774533.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-111 95
HP0538 BAD13790.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-107 95
HP0538 BAD13899.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-107 95
cagN YP_005779055.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-106 95
HP0538 BAD14009.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-107 95
cagN YP_005777279.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-107 95
cagN YP_003728726.1 cag pathogenicity island protein N Virulence cag PAI Protein 9e-112 95
cag17 AAR03900.1 Cag17 Virulence cag PAI Protein 8e-111 95
cagN YP_005775738.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-110 94
HP0538 BAD14036.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-113 94
HP0538 BAD13871.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-110 94
cag17 AAR03930.1 Cag17 Virulence cag PAI Protein 2e-111 94
cag17 AAR03872.1 Cag17 Virulence cag PAI Protein 8e-111 94
cagN AAF80207.2 CagN Virulence cag PAI Protein 3e-111 93
cagN NP_223204.1 cag island protein Virulence cag PAI Protein 2e-111 93
HP0538 BAD13926.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-117 93

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPPC_02660 YP_003926820.1 cag pathogenicity island protein (cagN, cag17) VFG0297 Protein 2e-111 95