Gene Information

Name : HPPC_02620 (HPPC_02620)
Accession : YP_003926812.1
Strain : Helicobacter pylori PeCan4
Genome accession: NC_014555
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein (cagU, cag11)
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 518055 - 518702 bp
Length : 648 bp
Strand : +
Note : -

DNA sequence : 
ATGAACGATGCAACAGAGCGCCATGGATCCAATTCGCTAAACGCCCCATCACCTAGCAACTCACAGAGCAATGATCTTTT
AAATTTGCTAGACTCGTTATATCCCAAAGGGAGTTTAGGGGAGCAAAGATTTCACGAAGCCCTAAAGAATCAAGAAGAGT
TGAAAAATATCCTAATAGAAATAGAAAAGCTACCGCAAGAAAAAAGGTATGAACTTCTGATGCAGATAGGACAAGCCAAA
CAGAGAATAATGGAAGCATACGCTCATTCATTCTTGGGATATATAGGTGGAATAGAGCATCTGTTAGGATTATGTATGGG
TGGGATATTTGTTTTGTTTGCAATCTATTTTGTATTTTTAAGAACTAGCAAAAACACGGATTTGGTGGAAAGTCTAAAAA
CAAAACTAAAACTTCAGTATTTTTACTATGCCTTTGGTGTGGGTGCGGTTTTGTTTTTTGGATTAGAAACAATTAGATCT
GTTTATGAACTATATATATTAGGAATTGGTAGCACTAACGATAAGGTGCTTTTTGTTTTGAAAAACATTTGCTTCATAGG
TATGGGCTATTTGATCTATAAAGTTATTAAGGTTATTGGTATAAAAAATTTTATCAATGGTCTTTTCACTTCAAAGAAAC
AAGAATAA

Protein sequence : 
MNDATERHGSNSLNAPSPSNSQSNDLLNLLDSLYPKGSLGEQRFHEALKNQEELKNILIEIEKLPQEKRYELLMQIGQAK
QRIMEAYAHSFLGYIGGIEHLLGLCMGGIFVLFAIYFVFLRTSKNTDLVESLKTKLKLQYFYYAFGVGAVLFFGLETIRS
VYELYILGIGSTNDKVLFVLKNICFIGMGYLIYKVIKVIGIKNFINGLFTSKKQE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0531 BAD13864.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-76 98
HP0531 BAD13810.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-75 98
HP0531 BAD13837.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-76 98
cagU YP_005775734.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-76 98
HP0531 BAD13783.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-76 98
HP0531 BAD14002.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-76 98
cagU YP_005779059.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-76 98
HP0531 BAD14056.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-76 98
cagU YP_005774538.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-76 98
HP0531 BAD13947.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-76 98
HP0531 BAD13892.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-75 98
cag11 AAR03866.1 Cag11 Virulence cag PAI Protein 4e-76 98
cag11 AAR03924.1 Cag11 Virulence cag PAI Protein 3e-76 98
cag-U AAF80202.1 Cag-U Virulence cag PAI Protein 5e-76 98
cagU YP_005777275.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-75 97
cag11 AAR03894.1 Cag11 Virulence cag PAI Protein 1e-75 97
HP0531 BAD14030.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-76 97
cagU YP_003728733.1 cag pathogenicity island protein U Virulence cag PAI Protein 1e-75 96
HP0531 BAD13974.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-75 96
cagU AGC69798.1 cag pathogenicity island protein U Virulence cag PAI Protein 8e-76 96
cag11 AAR03955.1 Cag11 Virulence cag PAI Protein 2e-75 96
orf18 NP_223198.1 cag island protein Virulence cag PAI Protein 1e-75 96
HP0531 BAD13919.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-75 96
HP0531 NP_207327.1 cag pathogenicity island protein (cag11) Virulence cag PAI Protein 3e-75 96

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPPC_02620 YP_003926812.1 cag pathogenicity island protein (cagU, cag11) VFG0291 Protein 1e-75 96