Gene Information

Name : HPPC_02610 (HPPC_02610)
Accession : YP_003926810.1
Strain : Helicobacter pylori PeCan4
Genome accession: NC_014555
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein W
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 515410 - 517017 bp
Length : 1608 bp
Strand : -
Note : -

DNA sequence : 
ATGTTTAATATCAAAAGGACTTTCTTAATAACGATCATAAGTTTTTTTCTCATTGTTCCTAATTGGTTGAAAGCTATTGA
TTTGCCCATTGTTTCAAATCTCAAAATTTACCAAACAGTTTATTGCATGCTGATACCGAGTTATGTTTTAACCAACAAAA
GTTTTGCAGATATTTTGACAGGTTATACATCTATTGGTGCATCAGGGAGTGGAAAGAGTTCAGGGCAGGGTGTGATCGAA
GCGCTTAGTGCACCATTAGCTACAAGTTTAGCCACTAGCAATCTAGTGAAATATTTGAATACTTTAGGTCCTTTATGGGG
ATCGGCGTGGGCGAGTGTTGCTACAGCTATACAAGGTTTTGCTCTAACCCCATCAAGTGGTTGCAATTTTGGTTGGAACG
CATTGATAAATAAAAACATAGATGTATCCACAGATAGCATGCTAGACAATTTGAGCAACAAGATTCAGAATTTTACCAAA
GGCGGTGTTGAGGACAATGTGAAAGGCAATGTTCTTTTACAAATAATTAACTCAATAACCGCTCAAGCTTCTACGAATAT
TACAGCTAATGGTTTAATTTGGCTGATTGGCAAAGAATTCACTGCAAATAAACTGCAAAACAACACTACAGCCATGCTTG
CTTTTGCCGCACTAGAATCTATTGTCAAAGGAGCGGACACTGCTGTTCTTCCTGCATATGGTGTAGTCAATCTGCCTGAT
ATTATCATAGGGCAAGGGTCATATCTTGATTTTGTTTCTTACCTAATTTATATTGTTTTTGGGATTTTTGTTTTTATTTC
TTTTATGAAATTGAGAGATATTTCAAATGGCATTCAGATTAACATAGGTTTTGAATACATGCGATTTGTTGGGGGGACAT
TATTCAAAATGGCGATGGTCTCTTTTATCGCCTACGCAGGTTTTGGTTATCTTTATAAAATCTCTTATTCCATTTATTTT
GGTTTAGCAGGTGCTTTTGGGCTGAATCAAGTTCTTTTTTGGGCTTTAGATTTAGTGCTGAATTACACTGTTAATTCAAT
TTTACCTGCGGTAAGAGCTGTTTTTTCTAATGTTGGCAACAACGCTCCTAGTTTGCTCCAAGGCTTGCAAGTTGCAGGTA
TTTCTTTATTCGCTATTTTTATGCAAGTAACTATCATTATGAGAATAAGCACTGTTGTTGTGAAACCTTTGATAGCGGGG
GCTTTTAGCGGTATTGTGTTCCCTATTGCGGTATGTTTGATCGTGCTAGATTGGTTCAAAGATTCTATGAAAAACATATT
GATATGGTTTATTAATAATTTGTTTATCTTGGTTCTAGCTATTCCTATTTTGCTCTTTGGTGTTTTGGCATTATTGGCAT
TCAATTTGACCATAACGCCCTCTGTTGCTATACAAAACATCAATCAAGGGGGACTAGGTATCGATTCGACTATTGCGAGT
TTGATCACTTTATTTATTTTAAAAGGTTTCATAGAGACGATTATTGAGAGTATCAATGCGATCGTTAATACCATTTTCAG
CTCTGTCTCTATGGATGGCAGCAGAATGGATAGAGAAAGAGATGCCTTAATGGTAGGAAGAGTTGGTGGATCTATGTTTA
AAGGATAA

Protein sequence : 
MFNIKRTFLITIISFFLIVPNWLKAIDLPIVSNLKIYQTVYCMLIPSYVLTNKSFADILTGYTSIGASGSGKSSGQGVIE
ALSAPLATSLATSNLVKYLNTLGPLWGSAWASVATAIQGFALTPSSGCNFGWNALINKNIDVSTDSMLDNLSNKIQNFTK
GGVEDNVKGNVLLQIINSITAQASTNITANGLIWLIGKEFTANKLQNNTTAMLAFAALESIVKGADTAVLPAYGVVNLPD
IIIGQGSYLDFVSYLIYIVFGIFVFISFMKLRDISNGIQINIGFEYMRFVGGTLFKMAMVSFIAYAGFGYLYKISYSIYF
GLAGAFGLNQVLFWALDLVLNYTVNSILPAVRAVFSNVGNNAPSLLQGLQVAGISLFAIFMQVTIIMRISTVVVKPLIAG
AFSGIVFPIAVCLIVLDWFKDSMKNILIWFINNLFILVLAIPILLFGVLALLAFNLTITPSVAIQNINQGGLGIDSTIAS
LITLFILKGFIETIIESINAIVNTIFSSVSMDGSRMDRERDALMVGRVGGSMFKG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0529 BAD14028.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
cagW YP_005775732.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
HP0529 BAD13862.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
cag9 AAR03892.1 Cag9 Virulence cag PAI Protein 0.0 99
HP0529 BAD13890.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
cag9 AAR03953.1 Cag9 Virulence cag PAI Protein 0.0 98
cagW YP_005774540.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
HP0529 BAD13835.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
HP0529 BAD13808.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
orf16 NP_223196.1 cag island protein Virulence cag PAI Protein 0.0 98
cag9 AAR03922.1 Cag9 Virulence cag PAI Protein 0.0 98
HP0529 BAD13972.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
cag-W AAF80200.1 Cag-W Virulence cag PAI Protein 0.0 98
HP0529 BAD13917.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
HP0529 NP_207325.1 cag pathogenicity island protein (cag9) Virulence cag PAI Protein 0.0 98
cag9 AAR03864.1 Cag9 Virulence cag PAI Protein 0.0 98
HP0529 BAD13781.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
cagW YP_005779061.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
HP0529 BAD14000.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
cagW YP_005777273.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
cagW AGC69796.1 cag pathogenicity island protein W Virulence cag PAI Protein 0.0 98
cagW YP_003728735.1 cag pathogenicity island protein W Virulence cag PAI Protein 0.0 98
HP0529 BAD13945.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 97
HP0529 BAD14054.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 97

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPPC_02610 YP_003926810.1 cag pathogenicity island protein W VFG0289 Protein 0.0 98