Gene Information

Name : HPPC_02565 (HPPC_02565)
Accession : YP_003926803.1
Strain : Helicobacter pylori PeCan4
Genome accession: NC_014555
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein (cag3)
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 502151 - 503596 bp
Length : 1446 bp
Strand : +
Note : -

DNA sequence : 
ATGTTTAGAAAACTAGCAACCGCTGTATCGCTCATAGGCTTACTAACCTCTAACACTCTTTATGCTAAAGAAATAAGTGA
AGCCGATAAGGTCATTAAGGCCACTAAAGAAACTAAAGAGACCAAGAAAGAAGCTAAACGACTCAAAAAAGAAGCTAAAC
AGCACCAACAGATCCCTGATCATAAGAAACCTCAATATGCCTCTGTTGATGACACAAAAACTCAAGCGCTGTTTGATATA
TACGACACCTTGAATGTGAATGACAAAAGCTTTGGGGATTGGTTTGGTAATAGCGCTTTGAAAGACAAAACCTATCTCTA
CGCTATGGATCTGTTGGATTATAACAACTACTTATCCATAGAAAATCCCATCATCAAAACAAGAGCAATGGGAACTTATG
CGGATCTCATCATCATCACAGGCTCGTTAGAACAAGTCAATGGGTATTACAACATTTTAAAAGCACTCAACAAGCGCAAC
GCTAAATTTGTCTTAAAGATTAACGATAAGATACCTTACGCTCAAGCGACTTTTCTAAGAGTGCCAAAAAGAAGCGATCC
TAATGCCCACACGCTTGATAAGGGAGCGTCAATTGATGAAAGCAAGCTTTTTGAACAACAAAAGAAAATGTATTTCAACT
ACGCTAATGATGTGATCTGCAGACCCGATGATGAAGTGTGTTCGCCCCTAAGAGATGAGATGGTAGCTATGCCCACTAAC
GATAGCGTTACCCAAAAACCCAATATCATTGCTCCCTATAGTTTATACAGGCTAAAAGAGACAAATAACGCCAATGAAGC
CCAACCATCACCTTATGCTACCCAAACCGCTCCTGAAAACAGCAAAGAGAAGCTCATAGAAGAGCTAATCGCTAACTCCC
AACTCGTAGCCAATGAAGAAGAGAGGGAAAAGAAACTCTTAGCAGAAAAAGAAAAACAAGAGGCTGAATTGGCTAAATAC
AAGCTCAAAGACTTAGAAAATCAAAAGAAACTAAAAGCTTTAGAAGCAGAGTTGAAAAAGAAAAACGCTAAGAAACCTAG
AGTAGTGGAAGTGCCTATTCCTCATCAAACAAGTGATTCTGATAAAACAATGAGAGTTATCAAAGAAAAAGAAAACTATA
ATGGATTATTAGTGGATAAAGAGACCACGATCAAAAGAAGCTATGAGGGGACTTTGATCAGTGAAAATTCTTACAGCAAA
AAAACACCTCTCAACCCTAATGACTTGAGAAGATTAGAAGAAGAAATTAAGAGCTACTATATCAAGTCTAATGGCTTGTG
TTACTCTAATGGCATTAACCTCTATGTAAAAATCAAAAATGATCCCTACAAAGAGGGAATGCTGTGTGGTTATGAGAGCG
TTCAAAATCTGCTCTCACCACTAAAAGACAAGCTCAAATACGACAAGCAGAAGTTACAAAAAGCGTTACTGAAAGATTCA
AAGTAA

Protein sequence : 
MFRKLATAVSLIGLLTSNTLYAKEISEADKVIKATKETKETKKEAKRLKKEAKQHQQIPDHKKPQYASVDDTKTQALFDI
YDTLNVNDKSFGDWFGNSALKDKTYLYAMDLLDYNNYLSIENPIIKTRAMGTYADLIIITGSLEQVNGYYNILKALNKRN
AKFVLKINDKIPYAQATFLRVPKRSDPNAHTLDKGASIDESKLFEQQKKMYFNYANDVICRPDDEVCSPLRDEMVAMPTN
DSVTQKPNIIAPYSLYRLKETNNANEAQPSPYATQTAPENSKEKLIEELIANSQLVANEEEREKKLLAEKEKQEAELAKY
KLKDLENQKKLKALEAELKKKNAKKPRVVEVPIPHQTSDSDKTMRVIKEKENYNGLLVDKETTIKRSYEGTLISENSYSK
KTPLNPNDLRRLEEEIKSYYIKSNGLCYSNGINLYVKIKNDPYKEGMLCGYESVQNLLSPLKDKLKYDKQKLQKALLKDS
K

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0522 NP_207318.1 cag pathogenicity island protein (cag3) Virulence cag PAI Protein 5e-167 97
cag-delta AAF80193.1 Cag-delta Virulence cag PAI Protein 1e-165 96
cag3 AAR03854.1 Cag3 Virulence cag PAI Protein 8e-166 96
cag3 YP_003728744.1 cag pathogenicity island protein delta Virulence cag PAI Protein 3e-166 96
cag3 AAR03914.1 Cag3 Virulence cag PAI Protein 3e-166 96
cag3 AGC69793.1 cag pathogenicity island protein 3 Virulence cag PAI Protein 2e-166 96
cag3 AAR03945.1 Cag3 Virulence cag PAI Protein 2e-165 96
HP0521 BAD13993.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-164 96
HP0521 BAD13965.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-164 96
HP0522 BAD13774.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-165 95
HP0522 BAD13855.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-163 95
orf8 NP_223189.1 cag island protein Virulence cag PAI Protein 5e-164 95
HP0522 BAD13938.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-165 95
cag3 YP_005777266.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-164 95
HP0522 BAD13828.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-164 95
cag3 YP_005779068.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-165 95
HP0522 BAD13883.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-164 95
HP0522 BAD13801.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-164 95
HP0522 BAD14047.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-165 95
HP0522 BAD14021.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-165 95
cag3 YP_005775725.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-163 95
cag3 AAR03885.1 Cag3 Virulence cag PAI Protein 4e-163 95
cag3 YP_005774547.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-164 94
HP0522 BAD13910.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-163 94

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPPC_02565 YP_003926803.1 cag pathogenicity island protein (cag3) VFG0282 Protein 2e-167 97