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Name : clpC (LPST_C0816) Accession : YP_003924130.1 Strain : Lactobacillus plantarum ST-III Genome accession: NC_014554 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease ATP-binding subunit ClpC Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 891055 - 893559 bp Length : 2505 bp Strand : + Note : - DNA sequence : ATGGATAACTTATTTACACCTAGTGCCAAAAGTGTGCTGGTACTGGCACAGGAACAGGCCAAATATTTCAAGCATCAGGC AGTTGGTACGGAGCATTTGCTATTAGCATTGGCCATCGAAAAGAATGGAATTGCTAATAAGGTGCTACAACAATATGCCG TTAGTGAAGATGACATTCGTGAAGAAATCGAACGGTTCACTGGCTATGGGACGTTGAGCAATGTTGGCAAGGATACTTAC TTGCCATATTCACCAAAGGCCAAAGAAATTTTGTCCGTTGCCGGTGATGAAGCAAAACGGCTCGGTGCCAACAAGATTGG AACGGAACATTTGTTGTTAGCGATGCTCTCTGATGAAAGTATCCTTTCCTCGCGAATTTTAATGAATTTAAACTTAGATC TAGGTCAGACGCGTAAAGTCGTTCTTCGCAAGCTAGGTGTCAGTGACGCCATGAGTAAGCGCAAGGGTAACGCGGCTAAT CGCGGTGGCAAGAAGACTGAAGGAACGCCAACCTTGGATTCTCTGGCGCGCGATTTGACCCAATTAGCTAGTGAACAAGA AATGGACCCGGTAGTAGGTCGTTCCAAGGAAGTCAAACGGGTCATTCAGATCCTGTCACGGCGGACGAAGAATAATCCGG TCTTGATTGGTGAACCTGGGGTTGGGAAGACTGCAATCGCCGAAGGTCTAGCCCAAAAGATTGTGGCCGGTGATGTGCCA ACTGATATGGCAGATAAGCGCTTGATGATGCTCGATATGGGGTCACTAGTCGCTGGGACAAAGTATCGTGGTGAATTCGA AGACCGCCTGAAAAAAGTGATTGATGAAATTTACAACGATGGCCATGTGATCTTATTTATCGATGAATTGCATACCTTGA TTGGTGCCGGTGGTGCTGAAGGGGCTATTGATGCCTCTAATATTCTGAAACCCGCACTTGCACGAGGGGAACTCCAAACG ATTGGGGCAACCACTTTAAATGAGTATCAAAAGTACATTGAATCTGACGCTGCGTTGGAACGGCGTTTTGCAACGGTCAT GGTCAATGAACCGACCGAAGACGAAGCCGTTGAAATCTTAGATGGACTACGGCCACGCTATGAAGAACATCATCGGGTTA CGATTACGGATGAAGCTGTTGATCAAGCAGTCAAGCTATCCAGCCGGTATATCAGTGATCGTTTCTTGCCTGATAAGGCC ATTGACTTGATGGATGAGGCGGCAGCTAAAGTCCGCATCGATCAGATGGATCAACCAACGAAGCTATCCAAGAACCAGGA CAAGTTAGCGCAACTGCGTGAGGATAAGGAAACAGCGATCGAAGCACAAGATTTTGAACAGGCCGCTGATATTCGTAAGC AGGAGATGCAACTGAAGCAACGCCTAGATCGAATCGAAGCTGACCAAGACGCCGAAGTGACTGAGGGGGCAACACCACAC TATGATTTACAAGTCACAGGTGAGGATATTGCTCAGGTCGTTGCCGAATGGACCGGGGTTCCGTTAACGCAATTGCAAAA ATCTGAAAGTGAACGCTTAGTTAACTTGGAAAAGATTTTGCATGAACGGGTTGTTGGACAGCCAGAAGCCGTATCCGCAG TGGCTCGTGCTATTCGCCGTGCGCGCAGCGGGTTGAAAGATCCGAGTCGGCCAATTGGTTCCTTTATGTTCTTAGGACCA ACTGGGGTTGGTAAGACGGAGCTAGCAAAAGCCTTGGCAGCAGCGATGTTCGGGTCTGAAGATAATATGATTCGGATCGA CATGTCTGAATACATGGAACGCTATTCGACTAGTCGTTTGATTGGCTCGGCACCTGGTTACGTTGGTTATGACGAGGGCG GTCAGCTGACAGAGAAGGTTCGCCAGAAACCATACTCGGTCGTGCTATTTGATGAAGTTGAAAAAGCTCATCCGGACGTC TTTAACATTTTGTTACAAGTTTTGGATGACGGCTACTTGACGGATTCTAAGGGTCGGAAGGTAGACTTCAGAAATACGAT TCTGATTATGACGTCGAACCTTGGGGCAACCACACTTCGTGATGAAAAATCAGTTGGTTTTGGTGCAACTGATAAGGCCA ATGACTACAATGCGGTTGCTGCGACGATTCGAGCAACGTTAAAACAGACGTTCCGCCCAGAATTCTTAAACCGGATCGAC GAAACAATCGTCTTCCATTCATTGAATAAGGAAGAATTACACGAAATCGTTAAGTTGATGTCACAAGAAATTGTTGATCG AGTGGCCCAACAAGGTATCAAGATCAAAATCACTCCGGCTGCCATTGACGTGGTTGCGAAGGCTGGCTTTGACCCTGAGT ACGGAGCACGACCAATTCGACGGGCATTACAGACTGAAATCGAAGATCGGTTGAGTGAAGAATTATTGACCGGCGCGATC AAGGTCGATGACCAAGTTACGATTGGTGCTAGCAAGGGTACCATTACAATTAATATTAAAAACCAGCCTAAGGCAGATGG TCGTTCGACCGTTTCCTCAAAGTAG Protein sequence : MDNLFTPSAKSVLVLAQEQAKYFKHQAVGTEHLLLALAIEKNGIANKVLQQYAVSEDDIREEIERFTGYGTLSNVGKDTY LPYSPKAKEILSVAGDEAKRLGANKIGTEHLLLAMLSDESILSSRILMNLNLDLGQTRKVVLRKLGVSDAMSKRKGNAAN RGGKKTEGTPTLDSLARDLTQLASEQEMDPVVGRSKEVKRVIQILSRRTKNNPVLIGEPGVGKTAIAEGLAQKIVAGDVP TDMADKRLMMLDMGSLVAGTKYRGEFEDRLKKVIDEIYNDGHVILFIDELHTLIGAGGAEGAIDASNILKPALARGELQT IGATTLNEYQKYIESDAALERRFATVMVNEPTEDEAVEILDGLRPRYEEHHRVTITDEAVDQAVKLSSRYISDRFLPDKA IDLMDEAAAKVRIDQMDQPTKLSKNQDKLAQLREDKETAIEAQDFEQAADIRKQEMQLKQRLDRIEADQDAEVTEGATPH YDLQVTGEDIAQVVAEWTGVPLTQLQKSESERLVNLEKILHERVVGQPEAVSAVARAIRRARSGLKDPSRPIGSFMFLGP TGVGKTELAKALAAAMFGSEDNMIRIDMSEYMERYSTSRLIGSAPGYVGYDEGGQLTEKVRQKPYSVVLFDEVEKAHPDV FNILLQVLDDGYLTDSKGRKVDFRNTILIMTSNLGATTLRDEKSVGFGATDKANDYNAVAATIRATLKQTFRPEFLNRID ETIVFHSLNKEELHEIVKLMSQEIVDRVAQQGIKIKITPAAIDVVAKAGFDPEYGARPIRRALQTEIEDRLSEELLTGAI KVDDQVTIGASKGTITINIKNQPKADGRSTVSSK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_003924130.1 | ATP-dependent Clp protease ATP-binding subunit ClpC | VFG0079 | Protein | 0.0 | 59 |
| clpC | YP_003924130.1 | ATP-dependent Clp protease ATP-binding subunit ClpC | VFG0080 | Protein | 3e-149 | 49 |
| clpC | YP_003924130.1 | ATP-dependent Clp protease ATP-binding subunit ClpC | VFG2084 | Protein | 4e-93 | 42 |
