|
Name : hsdR (LPST_C0751) Accession : YP_003924065.1 Strain : Lactobacillus plantarum ST-III Genome accession: NC_014554 Putative virulence/resistance : Unknown Product : type I site-specific deoxyribonuclease, HsdR subunit Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : - Position : 821377 - 824250 bp Length : 2874 bp Strand : + Note : - DNA sequence : ATGATGGCAAGTGGACATCAATCTGAGGCGGAATTAGAGAATCACCTCATTCGAAAGTTGCAAAGCATTGGCTATCATTA CGTTGAAATTCCCGATGTTGAAACGCTAAACGCGCATTTTCGCGCGGTCTTGAGTGAACGTAATCAAGAACGTTTAAAGG GAACACCACTGAGTGACCGTGAATTTCAGGCCGTATTAAATGATTTGATTGGCGCTAAGACGCATTATCAAGTTGCCCAA ATTTTACGTGGTTCGGTTGTTCAGCCAACTGGGAAAATTAATATTAAACGTGATGATGATAGCAGCTTATACCTAGAAAT TTTTAATGGAAAACAATTTGATCAGAATATTTTTGAAGTTAGCCATCAAATGACGGTTGAAGGTCGTCATGAGAACCGCT ATGATGTGCTGATCTTGATCAACGGGATGCCAATTGCCCAAATTGAGTTGAAGCGGCAAGGGGTTGAATTTACCCAGGCT TTTAATCAAATTATTCGCTACCGAACTGAATCGTACGCACAAGCAAAACTCATGCGACTGGTTCAGGTATTTGTCATTTC CAATGGCAATGAAACGCGGTATTTTGCGAATGGCGATGGTGAGTTAAATTCAAACTTCATGTTCTACTGGACGGATGAAC ATAATAACTGGTTGAATGACTTGGACGCTTTTACGACCACTTTCTTGAGTAAACCACGGTTACATAGTTTAATCGCAAAA TATACGGTGTTCGATAGTAGTGACCATAAAATGTTATTAATGCGCCCTTATCAAATATATGCCACTGAGGCAATTATTAA GCAAGCTATCGACCACCCCCATGAAAATGGGTATGTGTGGCACACGACGGGTTCTGGTAAGACGATTACCTCCTTTAAGG CCAGTCAGTTGTTATTACAAGAAACGGATGCTGAAAAGGTTATCTTCATGATTGACCGTGCTGACTTGGATATTCAGACG GTAAAGAATTTTAGTGCCTATCTGCCTGAAACAACTGGGGGCCAGAGTCCCTTGGATCGGACTGACAATACTGCTGCATT AGTCAAGCAGCTGTCCTCTAATGATAATGGCTTAATCGTGACGACCATTCAGAAGATGAATAATGCGGTCTCTAATGATC GGTATAAAGATATTCTGACACCGTACCATGACCGCAAAGTAATCTTCATTGAAGATGAAAGCCATCGTAGCCAGATGGGT GAAATGCGAAAAAACGTGAACCATTGGTTTAAGAATGCCCAACACTTCGGGTTCACAGGAACCCCGATTTTTCAACAGAA CATGGGACCCGATGGGCGGACCACAAAAGATCTGTACGAGAATCAGTTGCATCAATACTTGATTCGTGATGCAGTTCGTG ATGGTAACGTGCTTGGCTTTTCGATTCAGTATCTGTCGACCTTTGAAGAGACTGACCATGACATTACAGACGAACAAGTA CCAGGAATTGATACGCAAGAGGTCTATGAGTCCGAGGAGCGATTGACCAAGATTGTCGAGCATATCTTGTTGAACCATAG CCACATTACAAAGAATAAGCATTACAATGCGATCTTTACGGTAGCGAATACACGCATGGCTCTAAAGTACTATCAGTTGT TTAGAAGGTTGGACCCTGATCATAATTTGAAGGTCACGACAATCTTTACGTGGGCTGCCAATGAGGACGACAACGAGGAA CACCAAAAACAGGATGATGTCACTTCACGGATGGGATTAGATCAAGTCGTGAAGGACTATAATCAAATGTACGGTACGGA TTTTTCAACGGATAAATTCAAAGATTATTTTGCGGATGTTTCTAAGCGGATGCGCGATCATAATGACCAAACGCCGACGG ATAATATTGATATTTTGATTGTTGTGAACATGTTCCTAACTGGGTTTGACTCCAAACGGTTGTCCACACTATACGTGGAT AAAAATTTGCAATGGCACGGTTTAATCCAAGCATTTTCTCGAACCAATCGTGTTGAGGGCAAACAAAAACCATTCGGAAA TATTATTGCTTATCGCAATATCAAAAATAAGACGGATGAGGCTGTAGCGTTGTTTTCAGACGGGGACAGTTCCGGCTTCT TAGCACCAGATTATGATGAATTAAAAGCTGAATTTACTGACAAGATTGGCCAATTACTGACGGTGACTCCAGATGTCCAG TCAGTGGACGACCTCTATAACCGAGGCGATGACGCACTATATGAGTTTGTGATGGCGTTTCGGGCGGTCCTCCGGGTATA TAATCGTATTCGCGTGTATGATGATTTTGAATGGGCGCAATATGAACCTGAATTTTCGGATCAGCTGATGGAAGCCTTTC GGGGCAAATATTTTACGGCGTATCAAACGATTTATCAACGCAAAACGCAGGAGCGCGTCTCAATATTAGATGACGTTGAC TTTGATATCAGTCTATTGGAGACTGATACCATCAATGTTGACTATATTGTGAACTTAATCTCAGGCATTGACTTAATGTC GTCGACCGAACGTAAGCAAGATATTCAGAAAATTGAACATTTGTTGGATAATGCGACCAATGACCAATTAAAGTCGAAGG TTGAATTGTTGGAACAATTTTTGAATGAAGTTTTGCCAACGCTCGATACAGACGATGATATCGGCATGTCGTTGAGTAAC TTTATGGCCGAGAGCCAGCGAGCTGCCATTAAGGGCTTTTCACAAGAACACCACCTTTCGGAAGACTTCGTTAACGAGCA GATTTCTGACTACAACTTCTACGGTAAGACCAAGGACAAAGAGATTATTGACAAGTTAAGTGCTAATGGGCTCGGCTTTC GAGAGAAACGGCAGGCCAAACGCGAGATTAAGGATTTTGTATCGACTATCGACCGAAAGTATTCACTAAGCTAG Protein sequence : MMASGHQSEAELENHLIRKLQSIGYHYVEIPDVETLNAHFRAVLSERNQERLKGTPLSDREFQAVLNDLIGAKTHYQVAQ ILRGSVVQPTGKINIKRDDDSSLYLEIFNGKQFDQNIFEVSHQMTVEGRHENRYDVLILINGMPIAQIELKRQGVEFTQA FNQIIRYRTESYAQAKLMRLVQVFVISNGNETRYFANGDGELNSNFMFYWTDEHNNWLNDLDAFTTTFLSKPRLHSLIAK YTVFDSSDHKMLLMRPYQIYATEAIIKQAIDHPHENGYVWHTTGSGKTITSFKASQLLLQETDAEKVIFMIDRADLDIQT VKNFSAYLPETTGGQSPLDRTDNTAALVKQLSSNDNGLIVTTIQKMNNAVSNDRYKDILTPYHDRKVIFIEDESHRSQMG EMRKNVNHWFKNAQHFGFTGTPIFQQNMGPDGRTTKDLYENQLHQYLIRDAVRDGNVLGFSIQYLSTFEETDHDITDEQV PGIDTQEVYESEERLTKIVEHILLNHSHITKNKHYNAIFTVANTRMALKYYQLFRRLDPDHNLKVTTIFTWAANEDDNEE HQKQDDVTSRMGLDQVVKDYNQMYGTDFSTDKFKDYFADVSKRMRDHNDQTPTDNIDILIVVNMFLTGFDSKRLSTLYVD KNLQWHGLIQAFSRTNRVEGKQKPFGNIIAYRNIKNKTDEAVALFSDGDSSGFLAPDYDELKAEFTDKIGQLLTVTPDVQ SVDDLYNRGDDALYEFVMAFRAVLRVYNRIRVYDDFEWAQYEPEFSDQLMEAFRGKYFTAYQTIYQRKTQERVSILDDVD FDISLLETDTINVDYIVNLISGIDLMSSTERKQDIQKIEHLLDNATNDQLKSKVELLEQFLNEVLPTLDTDDDIGMSLSN FMAESQRAAIKGFSQEHHLSEDFVNEQISDYNFYGKTKDKEIIDKLSANGLGFREKRQAKREIKDFVSTIDRKYSLS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SSP0054 | YP_300144.1 | type I site-specific restriction-modification system restriction subunit | Not tested | SCC15305cap | Protein | 0.0 | 44 |
