Gene Information

Name : rrp3 (LPST_C0568)
Accession : YP_003923884.1
Strain : Lactobacillus plantarum ST-III
Genome accession: NC_014554
Putative virulence/resistance : Virulence
Product : response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 606638 - 607366 bp
Length : 729 bp
Strand : +
Note : -

DNA sequence : 
ATGACCATGGATAAGATTTTAGTGGTAGACGACGAACCAGCTATCGTCACGTTATTATCATATAACTTGAAGCAGGCGGG
GTACGAAGTTGTGACGGCGACGGATGGTGCGGACGCGTTGTCATTAGGCCTGGCCCAATCATTTACATGTATTTTGTTAG
ATTTGATGTTGCCGAAACTCGATGGAATGGAAGTAACAAAAAAGTTACGACAAGAAAAGGTTCAGACGCCTATTATTATT
GTGACGGCTAAAAATGATGAGTTTGATAAAGTGTTCGGCTTGGAATTAGGTGCGGACGATTATATAACCAAGCCGTTTTC
ACCCCGCGAAGTGCTCGCTCGGATCAAAGCAGTTATTCGGCGGACAACGCCGGACGAGCCCGTGACACCACCGGCACCCA
TGCCGCCTGCTAATCGTGCGGTAATGCTTGTTGGTGATTTACAGATTGATCAAAACAAATACCGAGTCGCGCGCAACGGG
AAAAATATCAGCTTGACACCAAAGGAATTTGAATTACTTGTGTATTTTGTTGAACGAGAAGGTCGGGTTCTCAGTCGTGA
TGCGATTTTAAATCACGTCTGGGGCTACGACTATGCTAGTGAGACGCGGATCGTTGATATTCACATCTCACATTTACGTG
AAAAGATTGAAGCAGATCCCAAGCAGCCACGGTTGATCAGGACGGTCCGGGGTTTTGGCTACGAATTTGTGGGTGACGGC
CATGCATAA

Protein sequence : 
MTMDKILVVDDEPAIVTLLSYNLKQAGYEVVTATDGADALSLGLAQSFTCILLDLMLPKLDGMEVTKKLRQEKVQTPIII
VTAKNDEFDKVFGLELGADDYITKPFSPREVLARIKAVIRRTTPDEPVTPPAPMPPANRAVMLVGDLQIDQNKYRVARNG
KNISLTPKEFELLVYFVEREGRVLSRDAILNHVWGYDYASETRIVDIHISHLREKIEADPKQPRLIRTVRGFGYEFVGDG
HA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 6e-35 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
rrp3 YP_003923884.1 response regulator HE999704.1.gene2815. Protein 8e-62 57
rrp3 YP_003923884.1 response regulator AE016830.1.gene1681. Protein 7e-65 54
rrp3 YP_003923884.1 response regulator NC_002952.2859905.p0 Protein 2e-56 53
rrp3 YP_003923884.1 response regulator NC_002951.3237708.p0 Protein 1e-56 53
rrp3 YP_003923884.1 response regulator NC_003923.1003749.p0 Protein 1e-56 53
rrp3 YP_003923884.1 response regulator NC_002758.1121668.p0 Protein 1e-56 53
rrp3 YP_003923884.1 response regulator NC_009641.5332272.p0 Protein 1e-56 53
rrp3 YP_003923884.1 response regulator NC_013450.8614421.p0 Protein 1e-56 53
rrp3 YP_003923884.1 response regulator NC_007793.3914279.p0 Protein 1e-56 53
rrp3 YP_003923884.1 response regulator NC_007622.3794472.p0 Protein 2e-56 53
rrp3 YP_003923884.1 response regulator NC_002745.1124361.p0 Protein 1e-56 53
rrp3 YP_003923884.1 response regulator NC_009782.5559369.p0 Protein 1e-56 53
rrp3 YP_003923884.1 response regulator NC_012469.1.7686381. Protein 7e-58 51
rrp3 YP_003923884.1 response regulator NC_012469.1.7685629. Protein 1e-45 47
rrp3 YP_003923884.1 response regulator NC_002758.1121390.p0 Protein 2e-42 43
rrp3 YP_003923884.1 response regulator NC_010079.5776364.p0 Protein 2e-42 43
rrp3 YP_003923884.1 response regulator NC_002952.2859858.p0 Protein 2e-42 43
rrp3 YP_003923884.1 response regulator NC_007622.3794948.p0 Protein 2e-42 43
rrp3 YP_003923884.1 response regulator NC_003923.1003417.p0 Protein 2e-42 43
rrp3 YP_003923884.1 response regulator NC_013450.8614146.p0 Protein 2e-42 43
rrp3 YP_003923884.1 response regulator NC_002951.3238224.p0 Protein 2e-42 43
rrp3 YP_003923884.1 response regulator NC_007793.3914065.p0 Protein 2e-42 43
rrp3 YP_003923884.1 response regulator CP001485.1.gene721.p Protein 5e-34 41
rrp3 YP_003923884.1 response regulator AE000516.2.gene3505. Protein 6e-39 41
rrp3 YP_003923884.1 response regulator CP000034.1.gene3671. Protein 2e-37 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
rrp3 YP_003923884.1 response regulator VFG1386 Protein 6e-41 42
rrp3 YP_003923884.1 response regulator VFG0596 Protein 3e-35 41