Gene Information

Name : isp2 (LPST_C1825)
Accession : YP_003925135.1
Strain : Lactobacillus plantarum ST-III
Genome accession: NC_014554
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3666
EC number : -
Position : 1959253 - 1960944 bp
Length : 1692 bp
Strand : +
Note : -

DNA sequence :
ATGCAAGATTATTATAACATGAATCAAACCACTTTGAGTATCGCCTTGGATTACCAACCAGAAGAGCATCATCCTGCTCG
TTACATCAACCAGCTTGTTGAGAGTTTAAAACTAAAATATGATTACCAGTTTGGCCGTCCGCGGGAATATAACCTCGGTG
CCATGTTAAAACTGGTCCTTTTAGCATACTGCTATGGCATTTTCAGCAGTCGTAAAATTGAACAGTTTGCCCGTGAAAAC
AAGCCAGCTGGGTGGTTAATTGCCGACCAAATTCCGTCCTACCGGACGATTTGTCGCTTTAGAATTTCTGATGAACTGGC
CACTTTGACAACCGATAGCTTATCACAGCTAACCCAATATCTTCGTCAAAATGGCATGATTGATGATGTTTCATTTATTG
ATGGAACTAAGATCCTAGCCGACGCCAACAAGTATAGCTTTGTTTGGAAGAAGAATACGATACGATTTGACAAGATGAAT
CGCGAAAAACTCGTTGACCTGTTAGGCGAGCTTCATGAAGCTAAAATTGTCGGTGAAATTCCGGCAGGATCAGAGCTGAC
TCCCGAACTATTGGATATCATGATTAGCAAGGTTGAGGATCACTTAGTGGTCCTTAATGAAACCGTGGAAGCAACTAAGC
AGGTTTCCCCGAACCCAGCCAAACAGCAACGCCGGACTGTTAAATCACAAAAACGTAAGTTGGATAAACGACGTGATAAA
ATGCGTGAACACCAAGCACAGCAAGCTATTTATGATCAACGTAACAGCTACTCTAAGACGGATCACGATGCCACCTTTAT
GCGGGTCAAGGAAGATCCGATGCAAAACGGTCAATTAAAACCTGCCTACAACGTTCAAATCGCCACGAGTAATCAGTTCA
TTACGGGATATCGGCTTTTCCAAAATCCAACCGACACACGAACCTTACAACCGTTTATTGAACATTTAAAGGCCAACAAT
GTGTTAGGTCACACCATCGTTGCCGATGCCGGATACGGTTCCGAAAGTAATTATCGGTACTTGGAAGATGAATTCGGTCA
GCATACCGTTTTAATTCCATACGGCACAATGCTTAAAGAGAATAGTCGAAAATGGCAAAGCGATGACCGTAAGGTTATGA
ACTGGGACTATCATGAAAAAGATGATTATTTTATCAATCCACAAAACGTCCGGTTTAATTTTAATGCTTATCGTCAACGG
ACTGATAAGTATGGTTTTACCCGTGACTTTAAAGAATACATTGCCGAAAAGTATGATGAAAATCATCAACTAATTTCCGC
GGCACTAACACCAAAAGGATATCTTAAAAGGATTTCCGTGAACGAAAATTGGGAATATTTCAAATCGAAACAACGAGAAT
TACTTTCAGCTCCAGAAACTGGTCAGATCTACGCTCAACGTAAGATCGATGTTGAGCCAGTTTTTGGCAAGATGAAGGCT
TCTTTACATTTCAATCGATTCTCGGTGCGAGGTTTCGACAAGGTCACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAA
CATTATGAAACTGGTCACGGTAGGGACCAGCTTTAAAAATCAAAGGCGTAAACAAATGGGACGAGAAACCAAAATTCGGT
TTCTCGTCCCATTTACTTATACAGAGGCTAGTTATGTCACAGCCTCTTTTTTTATTACTGGTGGATCACTCAGCCATGGT
CGGCAAGCCTAG

Protein sequence :
MQDYYNMNQTTLSIALDYQPEEHHPARYINQLVESLKLKYDYQFGRPREYNLGAMLKLVLLAYCYGIFSSRKIEQFAREN
KPAGWLIADQIPSYRTICRFRISDELATLTTDSLSQLTQYLRQNGMIDDVSFIDGTKILADANKYSFVWKKNTIRFDKMN
REKLVDLLGELHEAKIVGEIPAGSELTPELLDIMISKVEDHLVVLNETVEATKQVSPNPAKQQRRTVKSQKRKLDKRRDK
MREHQAQQAIYDQRNSYSKTDHDATFMRVKEDPMQNGQLKPAYNVQIATSNQFITGYRLFQNPTDTRTLQPFIEHLKANN
VLGHTIVADAGYGSESNYRYLEDEFGQHTVLIPYGTMLKENSRKWQSDDRKVMNWDYHEKDDYFINPQNVRFNFNAYRQR
TDKYGFTRDFKEYIAEKYDENHQLISAALTPKGYLKRISVNENWEYFKSKQRELLSAPETGQIYAQRKIDVEPVFGKMKA
SLHFNRFSVRGFDKVTKEAGIVILALNIMKLVTVGTSFKNQRRKQMGRETKIRFLVPFTYTEASYVTASFFITGGSLSHG
RQA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SAUSA300_0034 YP_492755.1 IS1272, transposase Not tested Type-IV SCCmec Protein 4e-73 45
SACOL0036 YP_184947.1 IS1272 transposase Not tested Type-I SCCmec Protein 2e-74 45
SAMSHR1132_00350 YP_005324559.1 putative transposase Not tested Type-IIIinv SCCmec Protein 2e-74 45
MW0034 NP_644849.1 hypothetical protein Not tested Type-IV SCCmec Protein 2e-74 45
unnamed BAA86649.1 hypothetical protein Not tested Type-I SCCmec Protein 1e-74 45
SE0076 NP_763631.1 transposase Not tested SCCpbp4 Protein 5e-70 42
tnp YP_254534.1 IS1272 transposase Not tested ¥ðSh2 Protein 5e-59 41