Gene Information

Name : BAMF_3852 (BAMF_3852)
Accession : YP_003922448.1
Strain : Bacillus amyloliquefaciens DSM 7
Genome accession: NC_014551
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator, winged helix family
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3913916 - 3914599 bp
Length : 684 bp
Strand : -
Note : Transcriptional regulatory protein yycF;, Signal transduction response regulator, receiver region, Response regulator receiver domain, PhoB: phosphate regulon transcriptional regulatory protein PhoB

DNA sequence :

ATGGATAAGTTGAAAGGCATCAAGGTGCTGATTGTAGACGATGAGCCGGCGATCATTGATTTTTTAACGATGGGGCTTGT
CAATGAAGGATTTGAAGTGATGTCCGCGGCAGACGGGATGTCGGCAATGAATCTTGTTAAAACATTTCAGCCTCATATTG
CTGTTTTGGACGTTATGATGCCGGGAATGGATGGGCTTGAGCTGTCAAGAATGCTCAAGAAAACAAGCAATACCGCCGTC
ATTATGCTGACCGCGAAGGATGAAGTAGAGCTCCGCGTAAAGGCGCTGATTGAAGGGGCTGATGATTACATGATCAAACC
GTTCAGCTTTGAGGAGCTGCTTGCCCGGATTTACGCAAGAATCCGCAACCAGTTTCCGCATCTTTTTGATGAGGTGGTGC
TCGGCCCTTTCCGAATCGATGACCGGAGCAGAGAGATTCATTACAATGAACAGCCTTTGAAGCTGTCTGCCACCGAATAT
GAACTGCTGAAATTTTTAGTGCTTCGCCACGGGACGGTGCTCAGTAAAACGAGGATTCTCGATCAAGTATGGGGCTATGA
TTTTTACGGGGAAGACAATATCGTCGAGGTGTACATCCGTTCTTTACGCGAAAAGCTGAAAGACAAAGAGCATAAAGTGA
TCCGCACGGTGCGGGGCGCGGGGTACAGGGTGGATCTGGCATGA

Protein sequence :

MDKLKGIKVLIVDDEPAIIDFLTMGLVNEGFEVMSAADGMSAMNLVKTFQPHIAVLDVMMPGMDGLELSRMLKKTSNTAV
IMLTAKDEVELRVKALIEGADDYMIKPFSFEELLARIYARIRNQFPHLFDEVVLGPFRIDDRSREIHYNEQPLKLSATEY
ELLKFLVLRHGTVLSKTRILDQVWGYDFYGEDNIVEVYIRSLREKLKDKEHKVIRTVRGAGYRVDLA

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
copR	NP_460069.2	transcriptional regulatory protein YedW	Not tested	SPI-5	Protein	2e-38	41

• Homologs from CARD and BacMet (resistance genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
BAMF_3852	YP_003922448.1	two component transcriptional regulator, winged helix family	NC_002952.2859905.p0	Protein	2e-35	41
BAMF_3852	YP_003922448.1	two component transcriptional regulator, winged helix family	NC_002745.1124361.p0	Protein	2e-35	41
BAMF_3852	YP_003922448.1	two component transcriptional regulator, winged helix family	NC_009782.5559369.p0	Protein	2e-35	41
BAMF_3852	YP_003922448.1	two component transcriptional regulator, winged helix family	NC_002951.3237708.p0	Protein	2e-35	41
BAMF_3852	YP_003922448.1	two component transcriptional regulator, winged helix family	NC_002758.1121668.p0	Protein	2e-35	41
BAMF_3852	YP_003922448.1	two component transcriptional regulator, winged helix family	NC_009641.5332272.p0	Protein	2e-35	41
BAMF_3852	YP_003922448.1	two component transcriptional regulator, winged helix family	NC_013450.8614421.p0	Protein	2e-35	41
BAMF_3852	YP_003922448.1	two component transcriptional regulator, winged helix family	NC_007622.3794472.p0	Protein	2e-35	41
BAMF_3852	YP_003922448.1	two component transcriptional regulator, winged helix family	NC_007793.3914279.p0	Protein	2e-35	41
BAMF_3852	YP_003922448.1	two component transcriptional regulator, winged helix family	NC_003923.1003749.p0	Protein	2e-35	41

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
BAMF_3852	YP_003922448.1	two component transcriptional regulator, winged helix family	VFG0596	Protein	7e-39	41
BAMF_3852	YP_003922448.1	two component transcriptional regulator, winged helix family	VFG1390	Protein	6e-36	41