Gene Information

Name : AARI_03940 (AARI_03940)
Accession : YP_003915601.1
Strain : Arthrobacter arilaitensis Re117
Genome accession: NC_014550
Putative virulence/resistance : Virulence
Product : iron-siderophore ABC transporter ATP-binding subunit
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : 3.6.3.-
Position : 427748 - 428623 bp
Length : 876 bp
Strand : -
Note : TCDB: ATP-binding cassette (ABC) superfamily, iron chelate uptake transporter (FeCT) family (TC 3.A.1.14.z). ABCISSE: ABC transporter, ATP-binding protein (ABC), ISVH- family (iron siderophores, vitamin B12 and hemin)

DNA sequence :
GTGGACACTCACCCCCTCGCCACTGCTAACACCGCCGAGTTGACCGTACCGACAAGTCGACTGTGGACGGTGAATGCCAC
GATCGGCTATGACAAGCGCGTCATCAACGAGAACCTGTCGGTGTCGATTCCCGATGAGTCTTTCACCGTGATCGTCGGGC
CGAATGCATGCGGCAAGTCGACCCTTCTGCGCGGGCTATCCAGGCTCCTGAAACCAGGATCAGGGCGGGTGGTACTTGAC
GGACAAGACATCCATTCCTACAAGGCCAAAGAGGTTGCGCGCAAGTTGGGACTGCTACCGCAGACCTCGCTCGCTCCCGA
TGGGATCAGAGTCGCTGATCTGGTCGCTCGCGGCCGGTATCCGTACCAGAAACTGATCCGACAGTGGACACCGGACGATG
AGCAGGCGGTCTCTACCGCGATGGCAGCAACTGGCATCCATGAACTCTCAGACCGGCTCGTCGACGAACTCTCCGGCGGG
CAACGACAGCGAGTCTGGGTCGCGATGGCGCTGGCACAGCAGACCGAAATCCTGTTGCTGGACGAGCCGACGACGTTCCT
TGACCTGACCCATCAGATCGAGCTGATGGAACTATTCACCGACCTCCACCTTGCCGGGCACACCCTTGTCGCCGTTCTTC
ACGACCTCAACCAGGCTGCCCGCTACGCAACGCATCTCGTCGCGATGAAGGACGGAGGTGTCGTCGCCGAGGGCCCACCG
GCTGAGGTACTGACCTCCGACCTGGTCGAGCAGGTGTTCGGTCTGCGCTGTCTCGTCGTTCCTGATCCCGTCGCAGGAAC
CCCGCAGGTGGTGCCGCTCGGACGAGACCGGCATCGGAACAAGGAAACTCCGATCAAGGAAGGAGGCACCGAATAG

Protein sequence :
MDTHPLATANTAELTVPTSRLWTVNATIGYDKRVINENLSVSIPDESFTVIVGPNACGKSTLLRGLSRLLKPGSGRVVLD
GQDIHSYKAKEVARKLGLLPQTSLAPDGIRVADLVARGRYPYQKLIRQWTPDDEQAVSTAMAATGIHELSDRLVDELSGG
QRQRVWVAMALAQQTEILLLDEPTTFLDLTHQIELMELFTDLHLAGHTLVAVLHDLNQAARYATHLVAMKDGGVVAEGPP
AEVLTSDLVEQVFGLRCLVVPDPVAGTPQVVPLGRDRHRNKETPIKEGGTE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 5e-62 51
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 2e-67 49
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 2e-67 49
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 2e-52 48
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 1e-62 48
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 1e-62 48
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-62 48
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 2e-62 48
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 1e-53 44
irp6C NP_938506.1 ATP-binding protein Irp6C Not tested Not named Protein 7e-29 42
CDCE8392_1767 YP_005134301.1 iron complex transport system ATP-binding protein Virulence Not named Protein 9e-39 42
irp6C YP_005124377.1 ATP-binding protein Irp6C Virulence Not named Protein 5e-28 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
AARI_03940 YP_003915601.1 iron-siderophore ABC transporter ATP-binding subunit BAC0164 Protein 2e-52 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
AARI_03940 YP_003915601.1 iron-siderophore ABC transporter ATP-binding subunit VFG0925 Protein 8e-79 59
AARI_03940 YP_003915601.1 iron-siderophore ABC transporter ATP-binding subunit VFG1042 Protein 1e-52 48