Gene Information

Name : AARI_30480 (AARI_30480)
Accession : YP_003918221.1
Strain : Arthrobacter arilaitensis Re117
Genome accession: NC_014550
Putative virulence/resistance : Virulence
Product : iron/manganese/zinc ABC transporter inner membrane subunit
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 3419695 - 3420582 bp
Length : 888 bp
Strand : +
Note : TCDB: ATP-binding cassette (ABC) superfamily, Manganese/Zinc/Iron Chelate Uptake Transporter (MZT) Family (TC 3.A.1.15.z). ABCISSE: ABC transporter, permease (IM), MET-family. This family is comprised of systems involved in the uptake of various metallic

DNA sequence : 
GTGCAACTAATCGACCTTCTCATCGAACCGCTCAGCTATGAATTCATGCTTCGAGCTTTGATCACTACGCTGACCGCATC
AGTAGTTTGCGCGGTCCTCTCATGCTGGCTTGTCCTCATCGGCTGGTCCCTCATGGGAGACGCGGTATCGCACGCAGTGC
TCCCCGGTGTTGTCCTTGCTTATATTGTCGGCGCACCCTTTGCCCTAGGAGCGGTAATCTTCGGATTCCTCGCAGTGCTG
CTCATCGGCATTGTGCGAGACACCAGCAGAGTAAAAGAAGACGCCGCCATCGGAATCGTTTTCACCACACTCTTTTCCCT
GGGACTAGTCCTCATCTCTGTAACCCCAGCACACACTGACCTGAACCACATCATCTTCGGAAATCTACTAGGCGTCTCAT
GGACAGATCTGGCACAAATCATCATCCTCGGTGCCCTAACCCTGGCGATACTCCTCACCAAACGCCGGGATTTCACTCTC
TACGCCTTTGATCCAACCCATGCCCACGCCATTGGATTGAACCCACGTTTACTCGGGGCACTGCTCTTAGCACTTCTAGC
AACGACAGCGGTCGTAGCGCTACAAGCAGTCGGAGTCATCCTTGTGGTCGCCATGCTCATCATCCCAGGAGCAACCGCAT
ACCTACTAACCAACCGCTTCAGCAGAATGCTGATGATCGCCCCACTCATCGCGGCACTATGCGCCGTTATAGGATTGTAT
GCGAGCTACTACTTCGACACAGCCTCCGGGGGCATGGTCGTCCTCAGCCAAGGCGCCGCTTTCTTCCTGGCATATCTCTT
CAGCCCACAACATGGACTAATCAGCGCCAAACTAGCTAGGTATCATAGGACCCGCAACGAATCCCGGCTACAGCACAGCC
CCAATTAA

Protein sequence : 
MQLIDLLIEPLSYEFMLRALITTLTASVVCAVLSCWLVLIGWSLMGDAVSHAVLPGVVLAYIVGAPFALGAVIFGFLAVL
LIGIVRDTSRVKEDAAIGIVFTTLFSLGLVLISVTPAHTDLNHIIFGNLLGVSWTDLAQIIILGALTLAILLTKRRDFTL
YAFDPTHAHAIGLNPRLLGALLLALLATTAVVALQAVGVILVVAMLIIPGATAYLLTNRFSRMLMIAPLIAALCAVIGLY
ASYYFDTASGGMVVLSQGAAFFLAYLFSPQHGLISAKLARYHRTRNESRLQHSPN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 4e-39 45
sitD NP_461785.1 permease Virulence SPI-1 Protein 5e-39 45
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 4e-40 44
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 4e-40 44
sitC NP_461784.1 permease Virulence SPI-1 Protein 4e-40 44
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 3e-40 44
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 4e-40 44
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 9e-39 44
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 8e-39 44
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 8e-39 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
AARI_30480 YP_003918221.1 iron/manganese/zinc ABC transporter inner membrane subunit BAC0442 Protein 1e-45 46
AARI_30480 YP_003918221.1 iron/manganese/zinc ABC transporter inner membrane subunit BAC0352 Protein 2e-39 45
AARI_30480 YP_003918221.1 iron/manganese/zinc ABC transporter inner membrane subunit BAC0351 Protein 2e-40 44
AARI_30480 YP_003918221.1 iron/manganese/zinc ABC transporter inner membrane subunit BAC0441 Protein 3e-42 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
AARI_30480 YP_003918221.1 iron/manganese/zinc ABC transporter inner membrane subunit VFG0528 Protein 2e-39 45
AARI_30480 YP_003918221.1 iron/manganese/zinc ABC transporter inner membrane subunit VFG0527 Protein 2e-40 44