Gene Information

Name : AARI_29890 (AARI_29890)
Accession : YP_003918160.1
Strain : Arthrobacter arilaitensis Re117
Genome accession: NC_014550
Putative virulence/resistance : Virulence
Product : iron/manganese/zinc ABC transporter substrate-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 3354627 - 3355568 bp
Length : 942 bp
Strand : -
Note : TCDB: ATP-binding cassette (ABC) superfamily, Manganese/Zinc/Iron Chelate Uptake Transporter (MZT) Family (TC 3.A.1.15.z). ABCISSE: ABC transporter, binding protein (BP), MET-family. This family is comprised of systems involved in the uptake of various me

DNA sequence : 
ATGCCCAGATCTCCACGTTCATTCCGCCCACGCTTTTCCCTTGCTATTAGCGCAGGAGCCCTAGCTCTCCTCCTCACTGG
CTGCACCACTTCCCCGCAAAATTACGCCACGACTCAAGAAAAGAAACCAGTGGTCCTAACCACATTCACCGTACTAGCCG
ATATCGCTGAAAACGTCGCCGGCGACCACCTGCAGATCGAATCCATTACGAAATTCGGAGCGGAAATACACGGCTATGAA
CCCACCCCGGGCGATATCAGCAAAGCTGCGAAAGCTGACCTGATCCTGGATAACGGAATGAATCTCGAAGCATGGTTCGG
CCAATTCGTCGAGGGCTTAGACGTGCCCCACGCTGTTGTCAGTGACGGTGTCGAACCAATCGATATCACCGAAGACGAGC
ATGCCGGAAAACCTAATCCCCATGCCTGGATGAGCCCGCTAAACGTACAGGTCTACGTCGATAACATGGCCTCGGCATTC
AGCACTCTTGACCCTGAAAATACCAATGAATACGCGCGTAATGCAGCAGCATACAAAGAGGAATTACAGGAAGTGCATGA
CGAGCTAGTCACTGAACTTTCCCATCTGCCCCAGAGCCAACGAGCACTCGTCACTTGTGAAGGAGCTTTTTCCTACCTTG
CCAAAGACACCGATCTAACCGAAAAATACATCTGGGCCGTCAACGCGGAGCAGCAAGCAACACCCCAGCAGATAACCTCT
GCCATCGAATTCGTCACCACGAACCAAGTACCCGCAGTTTTCTGCGAGTCCACAGTGTCTGACGCGCCCATGCAGCAGGT
CGTCGAAGCCACCGATGCCAAATTCGGTGGCACCCTCTATGTGGATTCCCTCTCCGGAAAAGACGGTCCTGTGCCTACCT
ATTTAGAGCTGATCCGTCACGACACGCAAACGATTATCGACGCATTGACTGGTGAGAATTAA

Protein sequence : 
MPRSPRSFRPRFSLAISAGALALLLTGCTTSPQNYATTQEKKPVVLTTFTVLADIAENVAGDHLQIESITKFGAEIHGYE
PTPGDISKAAKADLILDNGMNLEAWFGQFVEGLDVPHAVVSDGVEPIDITEDEHAGKPNPHAWMSPLNVQVYVDNMASAF
STLDPENTNEYARNAAAYKEELQEVHDELVTELSHLPQSQRALVTCEGAFSYLAKDTDLTEKYIWAVNAEQQATPQQITS
AIEFVTTNQVPAVFCESTVSDAPMQQVVEATDAKFGGTLYVDSLSGKDGPVPTYLELIRHDTQTIIDALTGEN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 4e-70 55
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 4e-70 55
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 3e-70 55
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 4e-70 55
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 4e-70 55

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
AARI_29890 YP_003918160.1 iron/manganese/zinc ABC transporter substrate-binding protein BAC0349 Protein 2e-70 55
AARI_29890 YP_003918160.1 iron/manganese/zinc ABC transporter substrate-binding protein BAC0439 Protein 4e-65 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
AARI_29890 YP_003918160.1 iron/manganese/zinc ABC transporter substrate-binding protein VFG0525 Protein 2e-70 55