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Name : smpB (AARI_12210) Accession : YP_003916401.1 Strain : Arthrobacter arilaitensis Re117 Genome accession: NC_014550 Putative virulence/resistance : Unknown Product : SsrA-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0691 EC number : - Position : 1359901 - 1360380 bp Length : 480 bp Strand : + Note : in bacteria, SsrA RNA recognizes ribosomes stalled on defective messages and acts as a tRNA and mRNA to mediate the addition of a short peptide tag to the C- terminus of the partially synthesized nascent polypeptide chain. The SsrA-tagged protein is then DNA sequence : GTGGCTAAGAAGAACCAAGAAGATCGAGTGATCGCGAGCAACCGCAAGGCGCGCCACGATTTTGAAATTCTCGACACCTT CGAAGCAGGCATGGTGCTCACGGGTACTGAAGTGAAGTCGCTGCGCGAAGGCAAAGCCTCGCTGGTGGACGGCTTCTGCC AGTTCTACCGCGATGAGCTGTACATCGAGAATGTCTATATCCCTGAATACCTCAATGGATCGTGGACCAATCATGCGGCA CGTCGTCGCCGCAAGCTTTTGCTGCACCGCCAGGAACTAATCAAAATTGAGCGCAAGATCAGCGAGGCCGGGCTCACCGT TGTCCCATTGAGCCTGTACTTCAAATCTGGCCGTGCCAAGGTGGAAATCGGCGTAGCCCGCGGTAAGCGGGAATTCGACA AGCGGCAGACCCTGCGCGAAAAGCAGGACAACCGCGAAGCGTTGCGTGCGATGCGTGAGCGCAACCGCGGCAACGCTTAA Protein sequence : MAKKNQEDRVIASNRKARHDFEILDTFEAGMVLTGTEVKSLREGKASLVDGFCQFYRDELYIENVYIPEYLNGSWTNHAA RRRRKLLLHRQELIKIERKISEAGLTVVPLSLYFKSGRAKVEIGVARGKREFDKRQTLREKQDNREALRAMRERNRGNA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 2e-25 | 51 |
| smpB | YP_001800894.1 | SsrA-binding protein | Not tested | Not named | Protein | 1e-25 | 50 |
