Gene Information

Name : BC1003_3642 (BC1003_3642)
Accession : YP_003908873.1
Strain :
Genome accession: NC_014540
Putative virulence/resistance : Virulence
Product : Yop virulence translocation R
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 130549 - 131199 bp
Length : 651 bp
Strand : +
Note : KEGG: bgl:bglu_2g02340 type III secretion-associated protein; TIGRFAM: Yop virulence translocation R; PFAM: type III secretion system inner membrane P protein

DNA sequence : 
ATGGTCCAGTTCAGTGACATTACCGGGCTGCTGATCGTCATTGTCGCGATCAGCCTCGTCCCTTTCGTTGCGATGGTCGT
CACCTCGTACGCGAAGATTGTCGTCGTGCTCGGTCTGTTGCGCAACGCGCTCGGCGTGCAGCAGGTGCCGCCCAACATGG
TGCTCAACGGCGTCGCGATTCTCGTCTCCATCTATGTGATGGCCCCCGTCGGCATGCAGGCCATGCAGTCCATGCAGGGT
CAGGCGATAGCCGGCCAGCCGACCCAGGCGCTGATCCAGGTATTCAGCGCGGCGCGCGAACCGTTCCGCACGTTCCTGCA
AAAGCACACGAACGAGCGCGAAAAGCGCTTTTTTATCCGCTCGGCAAATGTGGTGTGGCCGAAAGAAGCCGCGTCGAGCC
TGCATGAGAATGACCTGATCGTACTCGCGCCCGCCTTCACACTCACCGAACTCACCGACGCATTCAAGATCGGCTTTCTG
CTTTACATTGCCTTTATCGTCATCGACCTGATCATCGCGAATGTGCTGCTTGCAATGGGTCTGAACCAGGTGACGCCGAC
CAACGTGGCGATTCCGTTCAAGCTGCTGCTGTTCGTCGTGATGGACGGCTGGTCGACGCTGATTCACGGCCTCGTGATGA
CCTATCGCTAG

Protein sequence : 
MVQFSDITGLLIVIVAISLVPFVAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGVAILVSIYVMAPVGMQAMQSMQG
QAIAGQPTQALIQVFSAAREPFRTFLQKHTNEREKRFFIRSANVVWPKEAASSLHENDLIVLAPAFTLTELTDAFKIGFL
LYIAFIVIDLIIANVLLAMGLNQVTPTNVAIPFKLLLFVVMDGWSTLIHGLVMTYR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 3e-63 69
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 2e-63 69
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 1e-66 67
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 5e-66 67
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 5e-66 67
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 2e-66 67
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 2e-66 67
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 1e-66 67
lscR AAO18040.1 LscR Virulence TTSS locus Protein 5e-45 49
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 4e-31 43
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 2e-31 43
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 1e-35 43
unnamed AAL06354.1 EscR Virulence LEE Protein 5e-36 43
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 3e-30 42
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 3e-30 42
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 2e-36 42
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 4e-37 42
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 6e-37 42
escR AAK26700.1 EscR Virulence LEE Protein 4e-37 42
escR AAL57527.1 EscR Virulence LEE Protein 4e-37 42
escR CAC81847.1 EscR protein Virulence LEE II Protein 4e-37 42
escR CAI43889.1 EscR protein Virulence LEE Protein 4e-37 42
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 2e-36 42
escR AAC38369.1 EscR Virulence LEE Protein 4e-36 42
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 6e-37 42
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 6e-37 42
escR AAC31528.1 L0049 Virulence LEE Protein 4e-37 42
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 6e-37 42
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 7e-35 41
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 2e-30 41
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 2e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BC1003_3642 YP_003908873.1 Yop virulence translocation R VFG0188 Protein 2e-48 49
BC1003_3642 YP_003908873.1 Yop virulence translocation R VFG0394 Protein 4e-48 48
BC1003_3642 YP_003908873.1 Yop virulence translocation R VFG0044 Protein 1e-44 46
BC1003_3642 YP_003908873.1 Yop virulence translocation R VFG0827 Protein 2e-37 42
BC1003_3642 YP_003908873.1 Yop virulence translocation R VFG0715 Protein 2e-36 42