Gene Information

Name : Thet_2388 (Thet_2388)
Accession : YP_003905227.1
Strain : Thermoanaerobacter sp. X513
Genome accession: NC_014538
Putative virulence/resistance : Unknown
Product : hypothetical protein
Function : -
COG functional category : S : Function unknown
COG ID : COG1576
EC number : -
Position : 2379556 - 2380023 bp
Length : 468 bp
Strand : -
Note : PFAM: protein of unknown function DUF163; KEGG: tpd:Teth39_0106 rRNA large subunit methyltransferase

DNA sequence :
ATGAAAATACATATAATAGCTGTTGGAAAAATAAAGGAGAACTATATAAATAATGGGATAAATTTTTATTTAAAAAAATT
GCGACCTTATTGTGAAATAGAAATTAGAGAAGTAGAGGAAGAAAAAGCTCCTCAAAATTTAAGTGAAAAAGAAAAAGAGG
AGATTTTGCGTAAAGAAGGAGAGAGAATTCTTTCTAAAATAAAAAAAGGAAGCTTTGTTGTTTCTCTTGCTATAGAAGGA
AAAGAAATAGACTCATATAAATTTTCCCAATTTATAAAGGCTACTTTTCAATCTGGTTATAGAGAAATGACCTTTGTAAT
AGGTGGCTCGTTGGGATTGTGGGAAAATATAAAGAAACAATCTCACTTAAATCTTTCTTTTTCTAAAATGACATTTCCTC
ATCAATTGATGCGGCTCATACTTTTAGAACAGCTTTATTTAGCATTTGATGGTAAAAATCACTTGTGA

Protein sequence :
MKIHIIAVGKIKENYINNGINFYLKKLRPYCEIEIREVEEEKAPQNLSEKEKEEILRKEGERILSKIKKGSFVVSLAIEG
KEIDSYKFSQFIKATFQSGYREMTFVIGGSLGLWENIKKQSHLNLSFSKMTFPHQLMRLILLEQLYLAFDGKNHL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed BAC57492.1 hypothetical protein Not tested Type-IIIinv SCCmec Protein 1e-26 52
unnamed BAB72121.1 hypothetical protein Not tested Type-IVa SCCmec Protein 1e-26 52
SAR0024 YP_039501.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 1e-26 52
unnamed BAB72138.1 open reading frame X Not tested Type-IVb SCCmec Protein 1e-26 52
SAV0024 NP_370548.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 1e-26 52
unnamed BAC67575.1 open reading frame X Not tested Type-IVc SCCmec Protein 1e-26 52
unnamed BAA82243.1 orfX Not tested Type-II SCCmec Protein 1e-26 52
unnamed BAD24821.1 conserved hypothetical protein orfX Not tested Type-V SCCmec Protein 1e-26 52
orfX BAA86653.1 open reading frame X Not tested Type-I SCCmec Protein 1e-26 52
unnamed BAG06184.1 conserved hypothetical protein orfX Not tested Type-VII SCCmec Protein 1e-26 52
unnamed BAB47681.1 open reading frame X Not tested Type-III SCCmec Protein 1e-26 52
unnamed BAC53844.1 open reading frame X Not tested SRImec-III and SCCmec-III region Protein 1e-26 52
orfX YP_251938.1 rRNA large subunit methyltransferase Not tested SCCmec Protein 2e-26 51
orfX AAL26648.1 unknown Not tested SCCcap1 Protein 1e-26 51
SE0023 NP_763578.1 rRNA large subunit methyltransferase Not tested SCCpbp4 Protein 1e-25 50
SERP2529 YP_190070.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 1e-25 50
SSP0026 YP_300116.1 rRNA large subunit methyltransferase Not tested SCC15305RM Protein 2e-25 49
orfXhom BAB83497.1 open reading frame X Not tested SCC 12263 Protein 4e-22 47