Gene Information

Name : yfhA (HELO_1620)
Accession : YP_003896689.1
Strain : Halomonas elongata DSM 2581
Genome accession: NC_014532
Putative virulence/resistance : Virulence
Product : NtrC family response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 712341 - 713732 bp
Length : 1392 bp
Strand : +
Note : Uncharacterized protein yfhA - Escherichia coli O157:H7,InterPro: Response regulator NtrC type, High confidence in function and specificity

DNA sequence : 
ATGATCTCGACCGGACACTCTCAAGCCAATGCCGACCAGACGGCCCATATCCTGCTGGTGGACGATGACGTCAGCCTGCT
GAAGCTGCTGGGAATGCGGCTGGAGAGCCGTGGATACCGCGTGACCACCGCCGAGAGTGGCCGGGAGGCGCTCAAGCACC
TGGATACCGGCCGGCCGGATCTGGTGCTTTCCGACATGCGCATGGACGAGATGGACGGTCTGGCGTTGTTCCAGGAAATT
CAGCGGCGCCTGCCCGGCTTGCCGGTGATCATCCTCACTGCCCATGGCTCGATTCCCGATGCCGTCAGCGCCACGCGCCA
GGGGGTCTTCGGCTTTCTTACCAAGCCGGTGGATCGGGACGAACTGTTCTCCACCATCGACGACGCTCTGGCCCACACCT
CGGCGGCGTCCGGCGAGGACGACAGCTGGCGCGAAGCGATCATCACCCGCAGTCCGGAGATGGAGCGCATCCTCGAGCAG
GCCAGGATGGTGGCGAGCTCCGATGTCAGCGTGCTGGTCACCGGGCCCTCCGGTTCCGGCAAGGAACTGCTGGCCGGCGC
CATCCACAAGGCCAGCCGGCGTGCCGACAAGCCCTTCATCGCCATCAACTGCGGTGCACTGCCCGAGCAACTTCTCGAAA
GCGAGTTGTTCGGCCATGCCAAGGGCGCCTTCACCGGGGCGATCAGTGACCACCGGGGCCTGTTCCAGGCCGCCGACGGC
GGCACCCTGTTTCTCGACGAGATCGGCGATATGCCGCTGGCCCTGCAGGTCAAGCTGCTGCGCGCCTTGCAGGAGCGCCA
GATTCGTCCCCTCGGCTCGACCGCCTCGGTACCGGTGGACGTGCGGCTGATTTCGGCGACCCATCGCGACCTGGGGCAGG
CCATGCACGACGGAGAATTCCGCGAAGATCTCTTCTATCGTCTCAACGTGGTCAACCTGAAGCTGCCGCCGCTCAAGGAA
CGTGCCGAGGACGTGCCGCTGCTCGCCAAGTATCTGGTGACCCAGGCCGCCGAACGCCACAAGCCCTTCGTCAAGGGCTT
CTCCAAGGAGGCCATCAACCTGCTGGCCTCGAGCGCCTGGCCGGGCAATGTGCGTCAGTTGGTCAACGTGGTGGAGCAGT
GCGTGGCCCTGACCAGCTCGCCGATCATCCCCGAAGCGCTGGTGGCCCAGGCGCTGGTGGCCGAGGAGAACGCCCTGCCG
ACCTTCAATGACGCCCGGGCCGGGTTCGAGCGCAGTTATCTGATCAAGGTGCTCAAGATCACCGAAGGCAATGTCACTCA
GGCGGCGCGGATCGCCGGCCGCAACCGGACCGACTTCTACAAGTTGCTGGCCCGCCACGAACTCGAACCCTCGACCTTCA
AGCCGAACGCCGACCACAGCCAGCGTGCGTGA

Protein sequence : 
MISTGHSQANADQTAHILLVDDDVSLLKLLGMRLESRGYRVTTAESGREALKHLDTGRPDLVLSDMRMDEMDGLALFQEI
QRRLPGLPVIILTAHGSIPDAVSATRQGVFGFLTKPVDRDELFSTIDDALAHTSAASGEDDSWREAIITRSPEMERILEQ
ARMVASSDVSVLVTGPSGSGKELLAGAIHKASRRADKPFIAINCGALPEQLLESELFGHAKGAFTGAISDHRGLFQAADG
GTLFLDEIGDMPLALQVKLLRALQERQIRPLGSTASVPVDVRLISATHRDLGQAMHDGEFREDLFYRLNVVNLKLPPLKE
RAEDVPLLAKYLVTQAAERHKPFVKGFSKEAINLLASSAWPGNVRQLVNVVEQCVALTSSPIIPEALVAQALVAEENALP
TFNDARAGFERSYLIKVLKITEGNVTQAARIAGRNRTDFYKLLARHELEPSTFKPNADHSQRA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 9e-62 41
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 9e-62 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfhA YP_003896689.1 NtrC family response regulator BAC0467 Protein 9e-82 46
yfhA YP_003896689.1 NtrC family response regulator BAC0089 Protein 2e-77 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfhA YP_003896689.1 NtrC family response regulator VFG1214 Protein 2e-66 46
yfhA YP_003896689.1 NtrC family response regulator VFG0116 Protein 9e-61 44
yfhA YP_003896689.1 NtrC family response regulator VFG1249 Protein 9e-62 42