|
Name : HELO_1053 (HELO_1053) Accession : YP_003896121.1 Strain : Halomonas elongata DSM 2581 Genome accession: NC_014532 Putative virulence/resistance : Virulence Product : TRAP transporter large transmembrane protein Function : - COG functional category : G : Carbohydrate transport and metabolism COG ID : COG1593 EC number : - Position : 61083 - 62339 bp Length : 1257 bp Strand : + Note : tripartite ATP-independent periplasmic transporter (TRAP-T) large transmembrane protein (DctM-like protein), specificity unclear DNA sequence : ATGATTCTGTGGAGCATTCTCGTCGGCCTGGTGATCTGCATCGTTATCGGTCTACCGATCTCGTTCGGGTTGGCGGCGAT CAGCCTGTTCATCTTCTTCTATGCCGACTATTCGCTGTCACCTATCGTTGCCCAGGCAGTCAACGGCCTCGACTCCTTCC CGCTGCTGGCGATTCCTCTGTTCATCCTGGTCGGCGAAGTGATGAGCCAGGGCGGTATTGCCAAGCGTCTGGTACGTCTG GCCAGTGCACTGGTTGGCTTCATCGCTGGCGGATTGGGCCAGGTGGCAGTGTTGACCTCGATGTTCTTCGGCGGCATCAG TGGCTCGGCGGTGGCCGATGCTTCTGCCGTGGGCAGCATGATGATCGAGCCGATGAAACAGCATCGCTACAGCGGCTCGC TGGCTACCGCAATTGTGGTAGCGGCCTCGGTGGTGGGAATCATCATTCCACCATCGATTCCCATGATCCTGTTCGGCGTG GTGACCAATACTTCGATCTCGGAGCTGTTCATGGCCGGTATCGTGCCCGGCGTGCTGATCACGCTGGGGCTGGCAGTGAC TACCTTCTTGCAGGCCCGCAAGACTGGCAAGGGACAGCCTTTCGACATCCGTGAGTTGTGGTTGGCACTCAAGGAATCGG TACTGGCGCTGCTATTGCCGGTGATCATCGTTGGCGGGATTCTCTCCGGAGTCTTCACGCCTACCGAAAGTGCGGCAGTC GCGCTGATCTACGCCATCGTGGTGTCGATGTTTGTCTATCGTAGCCTGACGCTGAAACGTTTTTTCCGGCTGTGCATCAC TACTGGCCGGCTGACCGGTGTCGTCATGCTGTTGCTGGCCTTTGCCAGCGTGCTGGCCTGGCTGCTGACTGCAAATATGA TTCCACAGCAACTGGTCGTCAGCTTGTCGGCAATCACCGAGAACAAGTTGCTGCTGCTTCTGCTGCTCTCGTTGTTCTTG CTGGTGGTCGGCTTCTTCATGGACCTGACGCCGGCGATGGTGGTTCTCGCACCACTGATGACACCGGTGGTGGTCAAGCT GGGAATCGACCCGGTTTACTTCGGTGTACTGATGTCGTTCATCCTCGGCCTGGGGCTGATAACACCGCCGGTAGGCACTG TGCTTTACGTGGGCTGTGGCGTCGGGCGTGTCGGCATGGAGCAACTGGTCAAGAGCCTGCTGCCCTTCTACCTGACGCTA CTCCTTCTGCTGGCGGCTTTCCTGATCTTCCCCGGACTGATCCTCTGGTATCAATGA Protein sequence : MILWSILVGLVICIVIGLPISFGLAAISLFIFFYADYSLSPIVAQAVNGLDSFPLLAIPLFILVGEVMSQGGIAKRLVRL ASALVGFIAGGLGQVAVLTSMFFGGISGSAVADASAVGSMMIEPMKQHRYSGSLATAIVVAASVVGIIIPPSIPMILFGV VTNTSISELFMAGIVPGVLITLGLAVTTFLQARKTGKGQPFDIRELWLALKESVLALLLPVIIVGGILSGVFTPTESAAV ALIYAIVVSMFVYRSLTLKRFFRLCITTGRLTGVVMLLLAFASVLAWLLTANMIPQQLVVSLSAITENKLLLLLLLSLFL LVVGFFMDLTPAMVVLAPLMTPVVVKLGIDPVYFGVLMSFILGLGLITPPVGTVLYVGCGVGRVGMEQLVKSLLPFYLTL LLLLAAFLIFPGLILWYQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| VC1777 | NP_231412.1 | hypothetical protein | Not tested | VPI-2 | Protein | 1e-29 | 41 |
| VC0395_A1375 | YP_001217318.1 | hypothetical protein | Not tested | VPI-2 | Protein | 1e-29 | 41 |
| VPI2_0025c | ACA01842.1 | TRAP dicarboxylate transporter DctM subunit | Not tested | VPI-2 | Protein | 9e-30 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| HELO_1053 | YP_003896121.1 | TRAP transporter large transmembrane protein | VFG1110 | Protein | 5e-30 | 41 |
