Gene Information

Name : HELO_3344 (HELO_3344)
Accession : YP_003898413.1
Strain : Halomonas elongata DSM 2581
Genome accession: NC_014532
Putative virulence/resistance : Virulence
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 2766178 - 2766972 bp
Length : 795 bp
Strand : -
Note : -

DNA sequence : 
ATGAATGCCGTGGCTTGTTCCCTGGAGGCTCGCAAACTGACGCTCGCCCACGACCGCACGCCGGTCGTCGTCGACCTGGA
CCTCTGCCTGCCCACAGGCAAGGTGACCGCCATCGTCGGTCCCAATGGGTGCGGCAAGTCGACCCTGCTGGCGGGGCTGG
CGCGTCTGCACACGCCGCGGGGCGGTCATGTGCTGCTCGACGGCAACGAAATTGTCCGGCTACCGGCCCGGGAGCTGGCT
CGGCGGCTGGCGTTGCTGCCCCAGGAGGCCCGAGCGCCGGAAGGGCTGACCGTTGCCGAGTTGATCGGCTTCGGTCGCCA
GCCGCATCAGAGCTGGTTGCGGCAATGGTCGGCCGAGGATCGCCGGGTGGTGGATGAGGCGTTGGCCGCGGCGGACCTGC
ACGCCCTGGCCGATCGCCCGCTGGACTCGCTTTCCGGCGGACAGCGCCAGCGTGCCTGGATCGCCATGATCATCGCCCAG
CAGACGTCATTGCTGTTGCTCGACGAGCCGACATCGGCCCTCGACCTGGGGCATCAACTGGAAGTCTTCGAGCTGGTGCG
ACAATTGGCCGAGGAGGGACGAACCCTGGCGATGGTGCTGCATGACCTGCCCATTGCCTGTCGCTATGCCGATCACCTGG
TGGCAATGCGCGAGGGCAGGGTGGTGGCGGCGGGACCGCCCGATGAAGTGGTCACGCGTGAGCTGGTCCGCGAGCTTTAC
GGCGTGGACTGCACCCTGATGCATGATCCGCAGAGCGGAGCGCCGATATTGACGGGGTTGCGGCGGATTCGCTAA

Protein sequence : 
MNAVACSLEARKLTLAHDRTPVVVDLDLCLPTGKVTAIVGPNGCGKSTLLAGLARLHTPRGGHVLLDGNEIVRLPARELA
RRLALLPQEARAPEGLTVAELIGFGRQPHQSWLRQWSAEDRRVVDEALAAADLHALADRPLDSLSGGQRQRAWIAMIIAQ
QTSLLLLDEPTSALDLGHQLEVFELVRQLAEEGRTLAMVLHDLPIACRYADHLVAMREGRVVAAGPPDEVVTRELVRELY
GVDCTLMHDPQSGAPILTGLRRIR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 7e-40 48
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 3e-43 48
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 3e-43 48
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 3e-43 48
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 3e-43 48
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 1e-45 46
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 6e-39 45
CDCE8392_1767 YP_005134301.1 iron complex transport system ATP-binding protein Virulence Not named Protein 9e-25 42
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 5e-38 41
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 5e-38 41
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 5e-38 41
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 5e-38 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HELO_3344 YP_003898413.1 ABC transporter ATP-binding protein BAC0164 Protein 4e-40 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HELO_3344 YP_003898413.1 ABC transporter ATP-binding protein VFG0925 Protein 5e-48 50
HELO_3344 YP_003898413.1 ABC transporter ATP-binding protein VFG1042 Protein 4e-40 48