Gene Information

Name : HELO_3341 (HELO_3341)
Accession : YP_003898410.1
Strain : Halomonas elongata DSM 2581
Genome accession: NC_014532
Putative virulence/resistance : Virulence
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 2763542 - 2764327 bp
Length : 786 bp
Strand : -
Note : -

DNA sequence : 
ATGATAACGCCGCTGCATGAACCGGATCTGGCCCTGCACGTCGAGGATCTGACCGTCAGCTACCACAGCAAGCCGGTGCT
GTGGGACATCGACTTCGACGTGCCGCCCGGTGTGATGGCGGCCATCGTCGGCCCGAACGGCGCCGGCAAGAGTACCCTGA
TCAAGAGCGTGCTGGGCCTGGTGCCTGCGGTGGCGGGCCATGTCACCCTGTTCGGCCGGCCCTACCGGTCGCGTCGCCGG
CGGGTGGGCTATGTGCCGCAACGCTCCAGTGTCGACTGGGATTTTCCGACCACCGCTCTGGATGTGGTCACCATGGGGTT
ATATGGCCGGCTCGGCTGGCTCAAGCGACCGGGCCGGGGCGAGCGTCGGGAAGCCATGCAGGCACTGGAGATGGTCGGCA
TGCAGGACTTCGCCGATCGCCAGATCAGCCAGCTTTCGGGCGGGCAGCAGCAACGGGTCTTCCTGGCCCGGGCCCTGGTG
CAGCAGGCCGATGTCTATTTCCTCGACGAACCCATGGCAGGGGTCGATGCCACCACCGAACGGGCCATCGTGGATATCCT
TCGTCGCCTGCGCGACGACGGCAAGACGGTGATCGTCGTCCACCATGACCTGCAGACGGTACGCAGTTATTTCGATTGGC
TGCTGATCCTCAATATCCGGGTCATCGCCCAGGGGCATGTGGAAGACGTCTACACGGCCGAGAATCTGCGCCGCGCCTAC
GGCGGGCAGATCGCCCTGCTCGACGAGGCGGCCTTCATGCCTGCCGACAAGACCGCGGAGACGTAA

Protein sequence : 
MITPLHEPDLALHVEDLTVSYHSKPVLWDIDFDVPPGVMAAIVGPNGAGKSTLIKSVLGLVPAVAGHVTLFGRPYRSRRR
RVGYVPQRSSVDWDFPTTALDVVTMGLYGRLGWLKRPGRGERREAMQALEMVGMQDFADRQISQLSGGQQQRVFLARALV
QQADVYFLDEPMAGVDATTERAIVDILRRLRDDGKTVIVVHHDLQTVRSYFDWLLILNIRVIAQGHVEDVYTAENLRRAY
GGQIALLDEAAFMPADKTAET

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EF0575 NP_814340.1 cationic ABC transporter ATP-binding protein Not tested Not named Protein 3e-43 43
ef0093 AAM75296.1 EF0093 Not tested Not named Protein 3e-43 43
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 1e-43 43
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 1e-42 43
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 1e-42 43
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 4e-43 43
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 2e-43 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HELO_3341 YP_003898410.1 ABC transporter ATP-binding protein BAC0400 Protein 6e-65 62
HELO_3341 YP_003898410.1 ABC transporter ATP-binding protein BAC0350 Protein 8e-44 43
HELO_3341 YP_003898410.1 ABC transporter ATP-binding protein BAC0440 Protein 1e-41 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HELO_3341 YP_003898410.1 ABC transporter ATP-binding protein VFG0526 Protein 7e-44 43