Gene Information

Name : HELO_3337 (HELO_3337)
Accession : YP_003898406.1
Strain : Halomonas elongata DSM 2581
Genome accession: NC_014532
Putative virulence/resistance : Virulence
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 2759359 - 2760303 bp
Length : 945 bp
Strand : +
Note : -

DNA sequence : 
ATGCAGGAAGGGTCGGGCAAGCAAGCCCGATTCATTGAAAATGAGAACTTTTTGTCTTACGGTCTTGTCCCCGCTACCAC
ACCGACGAGTCGCCCCATGCCCTCGATCCCTGCCAAGCCACCGCGACTGACGGGCGAAGCCCTGTGTGCCGGCTACGATT
CCCGGCGCGTGCTGGACGGTGTCGATCTGACGGTGGCCGAGGGCAAGCTGACGATATTGCTCGGCCCGAACGGCAGCGGG
AAGTCGACGCTGCTGAAGACACTGGCGCGCACCCTGACGCCCAGCGCCGGTCGTGTGTACCTCGATGGCCAGGACATCCA
TCGCCGCAACACGCGGGAGGTGGCCCAGCGCCTGGGCATCCTGCCGCAAGGCCCCTCCGCACCGGAGGGGCTGACGGTCA
GGCAACTGGTCGGCATGGGCCGCTTCCCCCACCGGCGGCTCTGGCGACAGGATGCCGAGCGCGATGCCCGCGCCATTCGC
GAGGCCATGGCCCATGCCGACGTCACCGAGTTCGCCGAGCGCAGCGTCGACGCGCTCTCCGGCGGCCAGCGCCAGCGTTG
CTGGATCGCCATGGTACTGGCCCAGGAGACGGACCTGATCCTGCTCGACGAGCCCACCACCTTTCTCGATCTCAAGGTGC
AGGTGGACCTGCTGGAACTGCTCTCGCGCCTGGCCCACGAGCACGGCCGAACCCTGCTGGTGGTGCTGCACGACCTCAAC
CTGGCCGCCGCCTACGCCGACACCCTGGTGATGATGCGCGACGGCGCCATTCTCCGGCAGGGCGCCCCTAGGGACGTTTT
CACCGCCGCCAATCTCAAGGCGGTCTTCGATCTCGATGCCAACGTCATCCGCGATCCACACTCCCGCCGCTTGGTGTGCG
TGCCCACGCCGGGCGTGCACGCAGCCGCGACGTCCTCGCCGGCCATTGAAGGGGTCGCGCCATGA

Protein sequence : 
MQEGSGKQARFIENENFLSYGLVPATTPTSRPMPSIPAKPPRLTGEALCAGYDSRRVLDGVDLTVAEGKLTILLGPNGSG
KSTLLKTLARTLTPSAGRVYLDGQDIHRRNTREVAQRLGILPQGPSAPEGLTVRQLVGMGRFPHRRLWRQDAERDARAIR
EAMAHADVTEFAERSVDALSGGQRQRCWIAMVLAQETDLILLDEPTTFLDLKVQVDLLELLSRLAHEHGRTLLVVLHDLN
LAAAYADTLVMMRDGAILRQGAPRDVFTAANLKAVFDLDANVIRDPHSRRLVCVPTPGVHAAATSSPAIEGVAP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 8e-52 48
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 7e-49 45
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 1e-47 44
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 9e-45 44
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 9e-45 44
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 9e-45 44
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 9e-45 44
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 1e-42 42
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 1e-42 42
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 1e-42 42
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 1e-42 42
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 2e-50 41
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 2e-50 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HELO_3337 YP_003898406.1 ABC transporter ATP-binding protein BAC0164 Protein 4e-49 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HELO_3337 YP_003898406.1 ABC transporter ATP-binding protein VFG0925 Protein 1e-52 48
HELO_3337 YP_003898406.1 ABC transporter ATP-binding protein VFG1042 Protein 4e-49 45