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Name : rci (HELO_3302) Accession : YP_003898371.1 Strain : Halomonas elongata DSM 2581 Genome accession: NC_014532 Putative virulence/resistance : Unknown Product : site-specific recombinase, phage integrase family Function : - COG functional category : L : Replication, recombination and repair COG ID : COG4974 EC number : - Position : 2712657 - 2713715 bp Length : 1059 bp Strand : - Note : Integrase - bacteriophage 186,InterPro: Phage integrase, High confidence in function and specificity DNA sequence : ATGGCCACCATCGTCAAGACCCCTTCTGGTAGCTGGAAAGCCGTCATCCGCAAGACCGGCTGGCCCACCACCGCCAAGAC CTTCCGCACCAAGCGCGACGCCCAGGACTGGGCACGCCGCACCGAAGATGAAATGGTGCGTGGCGTCTATATCCAGCGCA GTGCCTCGGAGCGCATGACGCTCGAGGCCGCGCTCAAGCGCTACCTAGCGGACGTTACCCCTACCAAGAAGCCCAGCACC CAGAAGAGCGAACGCCACAAGGCCAATACGCTGATTGAGCACCTGGGCAAGTATTCCCTCGCGGCCCTGACGCCGGAGTT GATCGCCAACTTCCGTGACACGCGGCTCAACAGCCTGGGGCGCCGGGGGCAGCCCATCAGCGCCAATACCGTGCGGCTGG AGCTCGCTCTGCTTGGCCATCTCTATACTGTGGCCATCCAGGAATGGGGTCTGGGCCTGACCTACAACCCCGTCCAAAAC ATCCGCAAACCCAGCCCTGGAGAAGGGCGCGACCGGCGCCTGAGCGCCGACGAGGAGAAGCGCCTGTTCGCCGTGCTCCG GCAGCACAGCAACCCCATGCTGGCCTGGATCGCCAGAATCGCCCTGGAGACGGGCATGCGCTCCTCAGAGATCCTGACCC TCACTCGCTCCCAGGTCGACGTGAAGCGCCGCGTGGTGCGCCTCACGGACACCAAGAACAACGAAGCTCGCTTGGTGCCG CTGACTCAGGCTGCCACGGAAGTGTTCAAGCAGGCGCTCAACAACCCCGTGCGGCCATTCGACTGCGACCTGGTGTTCTT CGGCGAACCTGGAAAGGACGGCAAGCGCGGCCCCTATGCCTACACCAAGCTCTGGAACCAAGCAAAGAAGCAGGCTGGGC TCGATGACTTTCGCTTTCATGACCTACGTCATGAAGCCGTCAGCCGGCTGGTGGAGGCGGGGCTATCCGATCAGGAGGTC GCCACGATCAGTGGTCACAAGTCCATGCAGATGCTGCGGCGGTATACACATCTAAGGGCGGAAGATTTGGTTGGGAAATT GGATAATATTACTGGATAG Protein sequence : MATIVKTPSGSWKAVIRKTGWPTTAKTFRTKRDAQDWARRTEDEMVRGVYIQRSASERMTLEAALKRYLADVTPTKKPST QKSERHKANTLIEHLGKYSLAALTPELIANFRDTRLNSLGRRGQPISANTVRLELALLGHLYTVAIQEWGLGLTYNPVQN IRKPSPGEGRDRRLSADEEKRLFAVLRQHSNPMLAWIARIALETGMRSSEILTLTRSQVDVKRRVVRLTDTKNNEARLVP LTQAATEVFKQALNNPVRPFDCDLVFFGEPGKDGKRGPYAYTKLWNQAKKQAGLDDFRFHDLRHEAVSRLVEAGLSDQEV ATISGHKSMQMLRRYTHLRAEDLVGKLDNITG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | ABR13530.1 | site-specific recombinase | Not tested | PAGI-8 | Protein | 8e-122 | 70 |
| rci | NP_807850.1 | shufflon-specific DNA recombinase | Not tested | SPI-7 | Protein | 5e-40 | 41 |
| rci | AAC38070.2 | Rci | Not tested | SPI-7 | Protein | 3e-40 | 41 |
| rci | NP_458640.1 | shufflon-specific DNA recombinase | Not tested | SPI-7 | Protein | 5e-40 | 41 |
