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Name : xcpR (HELO_3220) Accession : YP_003898289.1 Strain : Halomonas elongata DSM 2581 Genome accession: NC_014532 Putative virulence/resistance : Virulence Product : general secretion pathway protein E (type II traffic warden ATPase) Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 2606350 - 2607834 bp Length : 1485 bp Strand : + Note : general secretion pathway protein E - Erwinia chrysanthemi,InterPro: Bacterial type II secretion system protein E, High confidence in function and specificity DNA sequence : ATGAACGCCCCGCAGCCCGCGACCACCGCCAGTCTCATGCCGTATCGACTGGCCCAGCGCAGCGGCGTGGCCATCGACTG GCAGGCCGAGGGCTATCACCTGCTGGCCCGCCGCGATGCCGATCCCTTGATTCTCCAGGAGCTGAGGCGCAGCCATGGCC CCCCGGCAGAGATCGAATGGCTCGACAGCGAGGCCTACACCAGCCGTCTGGGGCGTCTCTATGACGCCCAGCGCGAGACC AACAACCGCTTGATCGAGGGGCTCGCCGAACACGTCGACCTCGACGGCCTGATGCAGGAGCTGCCGCGCACCGAAGACTT GATGGACGCCGAGAACGAGGCGCCGGTGATCCGGCTGATCAACGGCATCTTTTCCGAGGCGCTGCGCCTGAGCGCCTCGG ACATTCACATCGAACCCTTCGAACGCGAGCTGATCGTGCGCCTGAGGGTCGACGGCGCCATGCGCGAGATCCTCGACCCG CCACGCGTGCTGGCGCCGATGCTGATCTCGCGCATCAAGGTCATGGCCGGGCTGGACATCGCCGAGAAACGCCAGCCCCA GGATGGCCGCATCACCGTTCGCGCCGCCGGGCGCCCGGTGGACATTCGCGTCTCGACCCTGCCCGGCATCCACGGCGAGC GGGTCGTGATGCGCCTGCTCGACAAGCAGGCCGCGCAATTGACGCTCGACGCCATCGGCATGCCGCCCGACACCCTGGCG GCCTACCGCCGCGCCCTGGCCCGCCCCAATGGCATCCTGCTCAATACCGGCCCCACCGGCTCAGGCAAGACCACCACCCT CTACGCCAGCCTGACCGCGCTCAACGATCGCCGGCGCAACATCCTCACCGTCGAGGACCCGGTCGAATATGCCCTGCCCG GCATCGGGCAGACGCCGGTCAACCCGCATGCCGGCGTCACCTTCGCCCGCGGTCTGCGCGCCATCCTGCGCCAGGATCCC GACGTCATCATGATCGGCGAGATCCGCGACCTGGAAACCGCCGCGACCGCCGTGCAGTCGAGCCTGACGGGCCACCTCGT GCTCTCGACGCTGCACACCAACAGCGCCCTGGGCGCCATCGCCCGGCTGCGCGACATGGGCATCGAACCCTTCCTGCTGG CCACCAGCCTCAAGGGCGTCATGGCCCAGCGCCTGGTGCGCCGCCTGTGTCCCGACTGCCACCGCTGGCGCGCCCCCAGC GACGCCGAGTGCCGACAGTTCCAGGGGCTCGAGTCCCTCTCGCGCATCGCCGAGCCGCTCGGCTGCGACGCCTGCGACCA CACCGGCTACCGAGGGCGCCTGGGGCTCTACGAGTTCATCGCCATCGACGACACCCTGGCGGCCATGATCCACGACGGCG CCAGCGAAGCGGCACTCGCCGCCCATGCCTTCCAGCAGACCGGCTCGCTGAGCGATGCGGCCCTGGAACGGCTCGCCGAT GGTGAAACCAGCCTCGAGGAGGTGCTGCGTGCCATTCACCAGTGA Protein sequence : MNAPQPATTASLMPYRLAQRSGVAIDWQAEGYHLLARRDADPLILQELRRSHGPPAEIEWLDSEAYTSRLGRLYDAQRET NNRLIEGLAEHVDLDGLMQELPRTEDLMDAENEAPVIRLINGIFSEALRLSASDIHIEPFERELIVRLRVDGAMREILDP PRVLAPMLISRIKVMAGLDIAEKRQPQDGRITVRAAGRPVDIRVSTLPGIHGERVVMRLLDKQAAQLTLDAIGMPPDTLA AYRRALARPNGILLNTGPTGSGKTTTLYASLTALNDRRRNILTVEDPVEYALPGIGQTPVNPHAGVTFARGLRAILRQDP DVIMIGEIRDLETAATAVQSSLTGHLVLSTLHTNSALGAIARLRDMGIEPFLLATSLKGVMAQRLVRRLCPDCHRWRAPS DAECRQFQGLESLSRIAEPLGCDACDHTGYRGRLGLYEFIAIDDTLAAMIHDGASEAALAAHAFQQTGSLSDAALERLAD GETSLEEVLRAIHQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 2e-118 | 51 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 2e-118 | 51 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| xcpR | YP_003898289.1 | general secretion pathway protein E (type II traffic warden ATPase) | VFG0182 | Protein | 3e-117 | 54 |
| xcpR | YP_003898289.1 | general secretion pathway protein E (type II traffic warden ATPase) | VFG1876 | Protein | 3e-119 | 51 |
| xcpR | YP_003898289.1 | general secretion pathway protein E (type II traffic warden ATPase) | VFG2048 | Protein | 6e-118 | 51 |
| xcpR | YP_003898289.1 | general secretion pathway protein E (type II traffic warden ATPase) | VFG2426 | Protein | 2e-70 | 49 |
| xcpR | YP_003898289.1 | general secretion pathway protein E (type II traffic warden ATPase) | VFG0233 | Protein | 2e-77 | 46 |
| xcpR | YP_003898289.1 | general secretion pathway protein E (type II traffic warden ATPase) | VFG1880 | Protein | 3e-79 | 44 |
| xcpR | YP_003898289.1 | general secretion pathway protein E (type II traffic warden ATPase) | VFG0112 | Protein | 2e-80 | 41 |
