Gene Information

Name : HELO_1150 (HELO_1150)
Accession : YP_003896218.1
Strain : Halomonas elongata DSM 2581
Genome accession: NC_014532
Putative virulence/resistance : Virulence
Product : TRAP transporter large transmembrane protein
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1593
EC number : -
Position : 173858 - 175138 bp
Length : 1281 bp
Strand : +
Note : TRAP transporter (tripartite ATP-independent periplasmic transporter), large transmembrane protein (permease, DctM-like protein).

DNA sequence : 
ATGGAAGTCATCATCCTGTTCAGCACCTTCCTGGTCCTGCTGCTGATCGGCATGCCCATCGCTTTCTCGTTGGGCATCGC
CTCGCTGGCCTATCTGCTGCTGGAAGGCATCTCGCTGACCGTCGTGCCGCAGCGCCTGTATGCGGGCATCGATACCTTCG
TGCTGCTGTGCATTCCCGGCTTCGTGCTGGCCGGCAACCTGATGAACGTCGGCAACATCACCGAGAACATCGTGCGCTTC
TCCAACGCCCTGCTCGGCCATATCCGCGGTGGGCTGGGCCTGGCCAACGTCGGCGGCTCGATGATCTTCGGCGGCATCTC
CGGAACCGCCGTGGCGGACTCGGCCAGCATCGGCTCGGTCATGATCCCCGGCATGGCCCGGTCCGGCTACGACAAGCCGT
TCGCCGCGGCGGTCACCGCTGCCTCTTCCACCGTCGGGCCGATCATTCCGCCCAGCGTGCCGATGATCATCGCCGGCTCG
CTCTCCGGGGTCTCGGTGGGTCGCATGTTCCTGGCCGGCGCCATTCCCGGCCTGCTGCTGGGGTTGGCGATGATGGTCAC
GGTGTACATCCTCGCCGTGCGGCGCGGCTATCCCAAGGAGGCCCGCGTACCCTTCCTGCAGCTGTTGCGCGAGGCCAGGA
CCGCCTTCTGGGCGCTGCTGATGACCGCCATCATCCTCTACGGCATCATCGGCGGTTTCTTCACGCCCACCGAGGCCTCC
ATCGTCGCCAGCCTCTATGCGCTGGTGGTCGGCATGTATGTCTACAAGGGCCTCACCTGGCGCAAGCTGCCGGCTATCCT
CACCGATACCGTCTTCACTTCCGCGGCACTGCTGCTGATGGTGGGACTGGCCAATCTCTTCGGCTGGATCCTGACCAGCG
AGCAGATTCCCCAGATGATCGCTGGCCTGATCCTGACGATCAGCGAGAATCCTCTGGTGGTGATCCTGATTCTCAACCTG
ATCCTGCTGTTCGTCGGCACCTTCATGGAGACCATCGCGGCGCTGATCATCCTTTTCCCGGCTCTGCTCGGCGTGGCCAC
CGGGGTGGGCATGGACCCGGTGCACTTCGCCGTCATGGCAGTGCTCAACCTGATGATCGGCCTGACCACCCCGCCGGTGG
GCGTGTGCCTGTTCGTGGTCTCGGGGATCGGCAAGCTGCCCATGCTGACCGTGGCCCGGGCCATCCTGCCGTTCCTGTTC
TGCAACCTGATGGTGCTGCTGCTGGTGGCCTATGTGCCGTCCATCTCGCTGTGGCTGCCCGACCTGATACTCGGCCAATG
A

Protein sequence : 
MEVIILFSTFLVLLLIGMPIAFSLGIASLAYLLLEGISLTVVPQRLYAGIDTFVLLCIPGFVLAGNLMNVGNITENIVRF
SNALLGHIRGGLGLANVGGSMIFGGISGTAVADSASIGSVMIPGMARSGYDKPFAAAVTAASSTVGPIIPPSVPMIIAGS
LSGVSVGRMFLAGAIPGLLLGLAMMVTVYILAVRRGYPKEARVPFLQLLREARTAFWALLMTAIILYGIIGGFFTPTEAS
IVASLYALVVGMYVYKGLTWRKLPAILTDTVFTSAALLLMVGLANLFGWILTSEQIPQMIAGLILTISENPLVVILILNL
ILLFVGTFMETIAALIILFPALLGVATGVGMDPVHFAVMAVLNLMIGLTTPPVGVCLFVVSGIGKLPMLTVARAILPFLF
CNLMVLLLVAYVPSISLWLPDLILGQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VPI2_0025c ACA01842.1 TRAP dicarboxylate transporter DctM subunit Not tested VPI-2 Protein 2e-67 49
VC1777 NP_231412.1 hypothetical protein Not tested VPI-2 Protein 3e-67 49
VC0395_A1375 YP_001217318.1 hypothetical protein Not tested VPI-2 Protein 3e-67 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HELO_1150 YP_003896218.1 TRAP transporter large transmembrane protein VFG1110 Protein 1e-67 49