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Name : lipA (HELO_2411) Accession : YP_003897480.1 Strain : Halomonas elongata DSM 2581 Genome accession: NC_014532 Putative virulence/resistance : Virulence Product : capsule polysaccharide modification protein Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG3563 EC number : - Position : 1633621 - 1635837 bp Length : 2217 bp Strand : - Note : capsule polysaccharide modification protein lipA -Neisseria meningitidis serogroup B,InterPro: capsule polysaccharide biosynthesis, High confidence in function and specificity DNA sequence : ATGCAATATTCATGGCAAATGGCATTCTCGGCCCCGGTCAGCCGGACCGCGACGAAGATTGCCGGCCGGGAGCCACAAGC GATAGGGAGATTGCCCACTCCAGGCAGCGAGATCGATCACGGTGCAGCGGATGCACAACGCGAAAAGGTCAAGCATCGAA TAACGCCCAAGCTACAAAGGATTGTCTTTTTGGCCACGACAGCCTCAGGAACCCTCGCCGTCGCGACCCGGCGCATGCTC GCCCTGCCCACGCTGCGCGCCTGTCTGCCCGAGTTCCAACGGCTCTGTCATCTCGGTTCTCCACGCGCGCGTCATGCCGG CGCCGTGGCCGGATGGGGCCTCAAGCCCAGCACACGCAAGGCCCGCGAGCATGCCGATCGCCATCGGCTGCCCTATATCG CCATCGAAGATGGCTTTTTGCGCTCATGGGGGCTTGGCGTGGAGGGGCACCCGCCCCATAGCCTCGTCGTCGACCCGCTG GGCATCTATTACGACGCCAGCCGGCCCTCGGCACTGGAAAACCTGATCCTGGCCGCCGAGCACACGTCCGAGGCGGAGCT CGCGCGTGCCAGAAGCGGCATGCAACAGCTGCGCGAACTGCGGCTCTCCAAGTACAACCATGCTCCGGATCGCCCGCTGT TCGACGACGACCGGCCGCGCGTGCTGGTCGTCGACCAGACTGCCGGCGATGCCTCGATCCCCGGCGGCCTGGCCGAAGCC GACGACTTCCAGCGGATGCTGGAGAGCGCCCGAGCCGAGCACCCCGAGTCGGAGATCCTGGTCAAGGTCCATCCCGACGT CATCGCCGGCAAGAAAGAGGGGCATCTCCTGGCGGCCGGCCAGCTCCCCGGCTGCCGCCTGATCGGCGAGACCCTGAGCC CCTGGTCGCTGCTCGATGCGGTGCATTGCGTGCATGTGGTCAGCAGCCAGTTGGGCTTCGAAGCCCTGCTGGCCGACAAG CGCGTCGTCTGCCACGGCGTGCCCTTCTATGCCGGCTGGGGGCTTACCGACGACCGCCGGCACTGCCCGCGGCGCGGCGT CCCCCGCTCGCTGGCACAGGTCTTTGCGGCGGCCTATTTCGGCTATGCCCGCTACGCCAACCCCTACACCGGCCAGGCCG GCGACTTCGAGCAGACCCTGGAGCTGATCGGCGACCAGACTCGCCAGCAGCGCCGTCTGGCGGGGCGCTGGGTCACCTAC GGGCTGTCGTCATGGAAGCGCGGTTTCGTCGGCGACTTTCTGGGCGATGGCACCGCCATTCGTCACCTGCGCCATAACAA GCCCCCGGAAGGCGCCGAACGCGGCGAGCGCCTGCTGTGCTGGGCATCGCAACTGGACAGCGCCGCCGAGCAGCGGTGTC GCGAGCGGGACCATGTCCTATGGCGCATGGAGGATGGCTTTCTGCGCTCCATCGGCCTGGGCGTCGACCTGGCCCGCCCG CTCTCCCTGGTCGTCGATTCACTCGGCATCCATTACGACGCCAACCGCGAAAGCGAACTGGAACGCACCCTCAACGAGGC CAGCTTCCCGCCCGCTCTATTGCAGCGTGCCGCCCGACTGCGCGAGCGGCTGGTCGCGCTGCGACTCTCCAAGTACAACG TCCCCGGTGCACGCCGCCTCCAGCGCCCCGAGGGTGGTCGCCTGCTACTGGTACCCGGCCAGGTGGAAACCGACGCCTCC ATAGCCCACGGCACCTTCGACATTCGCACCAACGGCGATCTGCTTGCCGCCGTGCGCCAGGCCAATCCCGAGGCCCGCAT CCTCTACAAGCCGCATCCCGACGTGACGACTGGTGCCCGGGTCGGCGCCCTGAGCCCGGGCGACGAACGGCTCTACGACC TCGAGGTCGGCGACGTCGATATCGTCGATTTGCTGGACATGGTCGACGAGGTCCATACCATGTGCTCCTTGGCGGGATTC GAGGCATTGCTCCGGGGACGTCGTGTCGTCACCTACGGCATGCCGTTCTATGCGGGCTGGGGGCTGACCGAGGATCGTCA TGCCTGCCCGAGACGTCGCCGGTCTCTCGAACTGGACGCCCTGGTCGCGGCCACCCTGATCCTCTACCCGTTGTATGTCG ATCCGGGCAGTCGACGACTCTGCAACGCCGAAACCGTCGTGGCCCTGCTGGAACAGCGCCGAGCCGACCATCATCAACCC GCGTGGCGAACGCACCTGTATCGCTGGTATCGCAATATCTTCATCGGAAAGCATTAA Protein sequence : MQYSWQMAFSAPVSRTATKIAGREPQAIGRLPTPGSEIDHGAADAQREKVKHRITPKLQRIVFLATTASGTLAVATRRML ALPTLRACLPEFQRLCHLGSPRARHAGAVAGWGLKPSTRKAREHADRHRLPYIAIEDGFLRSWGLGVEGHPPHSLVVDPL GIYYDASRPSALENLILAAEHTSEAELARARSGMQQLRELRLSKYNHAPDRPLFDDDRPRVLVVDQTAGDASIPGGLAEA DDFQRMLESARAEHPESEILVKVHPDVIAGKKEGHLLAAGQLPGCRLIGETLSPWSLLDAVHCVHVVSSQLGFEALLADK RVVCHGVPFYAGWGLTDDRRHCPRRGVPRSLAQVFAAAYFGYARYANPYTGQAGDFEQTLELIGDQTRQQRRLAGRWVTY GLSSWKRGFVGDFLGDGTAIRHLRHNKPPEGAERGERLLCWASQLDSAAEQRCRERDHVLWRMEDGFLRSIGLGVDLARP LSLVVDSLGIHYDANRESELERTLNEASFPPALLQRAARLRERLVALRLSKYNVPGARRLQRPEGGRLLLVPGQVETDAS IAHGTFDIRTNGDLLAAVRQANPEARILYKPHPDVTTGARVGALSPGDERLYDLEVGDVDIVDLLDMVDEVHTMCSLAGF EALLRGRRVVTYGMPFYAGWGLTEDRHACPRRRRSLELDALVAATLILYPLYVDPGSRRLCNAETVVALLEQRRADHHQP AWRTHLYRWYRNIFIGKH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| kpsC | YP_854335.1 | capsule polysaccharide export protein KpsC | Not tested | PAI I APEC-O1 | Protein | 3e-84 | 46 |
| kpsC | AAZ04470.1 | capsule polysaccharide export protein | Virulence | PAI I APEC-O1 | Protein | 3e-84 | 46 |
| lipA | NP_273145.1 | capsule polysaccharide modification protein | Not tested | IHT-A | Protein | 2e-102 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lipA | YP_003897480.1 | capsule polysaccharide modification protein | VFG0692 | Protein | 5e-98 | 45 |
| lipA | YP_003897480.1 | capsule polysaccharide modification protein | VFG0259 | Protein | 9e-103 | 44 |
| lipA | YP_003897480.1 | capsule polysaccharide modification protein | VFG0704 | Protein | 5e-81 | 43 |
