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Name : lipA (HELO_2399) Accession : YP_003897468.1 Strain : Halomonas elongata DSM 2581 Genome accession: NC_014532 Putative virulence/resistance : Virulence Product : capsular polysaccharide export protein Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG3563 EC number : - Position : 1606568 - 1608568 bp Length : 2001 bp Strand : + Note : capsule polysaccharide modification protein lipA -Neisseria meningitidis serogroup A,InterPro: capsule polysaccharide biosynthesis, High confidence in function and specificity DNA sequence : ATGGCTCAATGCCAGAATCTGGATGCCCTGGCGTATTGGGGAACACCAGCCTGCAGAAGGCGTGCTATGGATTTGGCCGA GCGAACGGGAGTTCCGCTGTTTTCGCTTGAGGAAGGCTTTCTTAGAGCCTATGCCGAGCATGAGGGGTTGCCGTCGCTTT CCTTGATCGTGGATGACTTGGGTACGTATGGCGATGCCTTGTCTCCTCCTCGCCTGGAGGCATTGTTGAATGAGGAGGCG TCACCGCTCAAGGGCATCGAATCGAAGGCCGATAAGGCCATGCATCTTCTGATGTCCGAGCGCTTGAGTCGCTACAATGA TGCCCCCGATCTGGATGCATCGCTTCTGTCATGTGATGCTCGGGAACGGGTATTGGTAGTCGATCAGGCATGGGATGAGC TCGGGGGGAAGGCAGGCCAGCATGCTCCCAGTTTTCAAGATATGTTGGCGGCAGCCCTGGCGGAGAATCCTGACGCCACG ATTTGTGCGTATACGCCTCATGCTGGTCGGTCCTCTCGGGACCATGAGTCTGGGGCTCTGACGGAACATGATGGCGGGGA GCGAGTTGTCGTGCTCCACAAGCAGGTTAACCCCTGGAGCCTGCTCGAGAGCATGAGCCGTGTCTATACGGTGGGTGCGC ATATCGGCTTCGAAGCGCTGATGGCCGGCTTGCCGGTAAGTGTTTTCGGAATGCCCTGGTATGCAGGCTGGGGAGCGACG GACGATCGTTTGGCGTGTGCTCATCGTGTGCGCTCGCGAAGCGTTGGAGAGCTTTTCGCGGCAGCCTATATTCGGTGCAG TCGTTACCTGAATCCCGTGACACTGGAGCCGGGTGATATCTTCGATGTCATACGTTGGCTGGCTCGCCAGCGTCGGGTCG AGGGGCGCATCGAGGGTCGCCGGATCATGGTGGGATTTCGTTGCTGGAAAGCTGCCAACCTGGGAGCGAGGTTGTCGCTG TTGCCGACTCGACTGGCCCGTGTAGCAGACGCAAGAAAAGCGGAGCGCCTCGGTTTGGGGCCTCGGGACGCTCTTGTGCT ATGGGGCCGCGATACGCCGCCGGAAATCTCGTCTCTGGCAGTTCGTACTGGAGCCCGATTGCTGCATATGGAAGATGGCT TTGTCCGCTCGGTAGGACTGGGGTCCGAGATGGTGCCTCCTCGCTCCATTGTGCTGGATGAGCGGGGGATCTATTTCGAT CCTGGCCAGGCTTCAGATCTCGAATATCTGTTGAATACACACCGGTTCACCGATGACGAGCTGGAGCGTGCCGAGCGTGT TCGGAGCTGGATCGTGCAGCACCGGATCACCAAGTATAATGTCGAGCCTCATTGTGTTCCGGATTGGGACACACAAGGGC GAGAGGTCGTACTGGTTCCTGGGCAGGTCGAAGATGATGCCTCGATTCGTTACGGAACCAATGCGGTGCGTACCAATCTC GGACTGCTCGAAGCTGCCCGGACTGCCCATCCTGAAGCGTTTCTGGTTTACAAGCCTCACCCCGACGTGATCCGGGGAGG GCGCCAGGGCCATGTCGTGTTCTCCGAGACTTTCGATCTAGTCGATCACGTCGAGACCGAATTGTCGGTGATCAGTTGCA TCGAAGCTTGTGATACGGTGCATACCATGACCTCCCTGACTGGCTTCGATGCCTTGCTGCGCGGCAAGCGTGTCGTCACC TATGGGGAACCCTTCTACGCCGGGTGGGGGTTGACCGATGACAGAGCGGCGGATGCGAAAGCCCTGGCTCGTCGTTCTCG GCGTCTCAACCTGGCGGAACTGGTGGCGGGTACTCTTCTGCTTTATCCGCTGTATTGGGATCCCGTGCTCCATGGTTATA CCAGCTGCGAAGCCGTATTGCGCCGAATCATCCAGGAGCGCGATGCCTTGATGGCACGAACCGGCCTGGTTCATAAGCGT CTGGGCTATTGCCGGCGTCAGTGGCGAAAGCTGAAAATCATTCATCGGTCTTTCGTTTGGGGAAAACGCTTTTCCCGATG A Protein sequence : MAQCQNLDALAYWGTPACRRRAMDLAERTGVPLFSLEEGFLRAYAEHEGLPSLSLIVDDLGTYGDALSPPRLEALLNEEA SPLKGIESKADKAMHLLMSERLSRYNDAPDLDASLLSCDARERVLVVDQAWDELGGKAGQHAPSFQDMLAAALAENPDAT ICAYTPHAGRSSRDHESGALTEHDGGERVVVLHKQVNPWSLLESMSRVYTVGAHIGFEALMAGLPVSVFGMPWYAGWGAT DDRLACAHRVRSRSVGELFAAAYIRCSRYLNPVTLEPGDIFDVIRWLARQRRVEGRIEGRRIMVGFRCWKAANLGARLSL LPTRLARVADARKAERLGLGPRDALVLWGRDTPPEISSLAVRTGARLLHMEDGFVRSVGLGSEMVPPRSIVLDERGIYFD PGQASDLEYLLNTHRFTDDELERAERVRSWIVQHRITKYNVEPHCVPDWDTQGREVVLVPGQVEDDASIRYGTNAVRTNL GLLEAARTAHPEAFLVYKPHPDVIRGGRQGHVVFSETFDLVDHVETELSVISCIEACDTVHTMTSLTGFDALLRGKRVVT YGEPFYAGWGLTDDRAADAKALARRSRRLNLAELVAGTLLLYPLYWDPVLHGYTSCEAVLRRIIQERDALMARTGLVHKR LGYCRRQWRKLKIIHRSFVWGKRFSR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| kpsC | YP_854335.1 | capsule polysaccharide export protein KpsC | Not tested | PAI I APEC-O1 | Protein | 2e-85 | 42 |
| kpsC | AAZ04470.1 | capsule polysaccharide export protein | Virulence | PAI I APEC-O1 | Protein | 1e-85 | 42 |
