Gene Information

Name : Cyan7822_0012 (Cyan7822_0012)
Accession : YP_003885341.1
Strain : Cyanothece sp. PCC 7822
Genome accession: NC_014501
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 13906 - 14634 bp
Length : 729 bp
Strand : +
Note : KEGG: cyh:Cyan8802_2353 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver

DNA sequence :
TTGGAAACACATAAAGAAAAAATTCTAGTAGTTGATGACGAGGCCAGCATTCGCCGTATCTTGGAAACCCGTCTTTCCAT
GATTGGTTATGATGTGGTCACGGCGGCTGACGGCGAAGAAGCTTTAGAAACTTTTCGTCAAACCAATCCTGATTTAGTAG
TCTTAGATGTGATGATGCCAAAATTAGACGGCTACGGCGTTTGTCAGGAACTGCGAAAGGAGTCTGATATCCCCATCATC
ATGTTAACGGCTTTAGGAGATGTAGCGGATCGGATCACGGGTTTAGAACTCGGTGCCGATGATTATGTGGTAAAACCCTT
TTCTCCCAAGGAATTAGAAGCCAGAATTCGCTCAGTGCTAAGACGAGTGGAAAAAAATGGCGCTCCCGGTATTCCCAGTT
CTGGCGTGATTCACGTCGGCTCAATTAAAATTGATACCAACAAGCGGCAAGTGTATAAAGGAGATGAGCGTATTCGACTA
ACCGGCATGGAATTTAGTCTGTTGGAATTATTGGTTAGCCGCTCAGGAGAACCTTTCTCTCGTTCAGAAATTTTACAGGA
AGTGTGGGGCTATACTCCCGAACGTCACGTCGATACAAGAGTGGTAGATGTTCATATTTCCCGTTTGAGAGCTAAATTAG
AAGATGATCCCAGTAATCCTGAACTGATTCTGACTGCTAGAGGAACTGGCTATTTATTTCAGAGAATTTTAGAACCCGGA
GAAGAATAA

Protein sequence :
METHKEKILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRQTNPDLVVLDVMMPKLDGYGVCQELRKESDIPII
MLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEKNGAPGIPSSGVIHVGSIKIDTNKRQVYKGDERIRL
TGMEFSLLELLVSRSGEPFSRSEILQEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQRILEPG
EE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 8e-31 43
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 4e-30 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cyan7822_0012 YP_003885341.1 winged helix family two component transcriptional regulator NC_002952.2859905.p0 Protein 4e-47 50
Cyan7822_0012 YP_003885341.1 winged helix family two component transcriptional regulator NC_009641.5332272.p0 Protein 5e-47 50
Cyan7822_0012 YP_003885341.1 winged helix family two component transcriptional regulator NC_013450.8614421.p0 Protein 5e-47 50
Cyan7822_0012 YP_003885341.1 winged helix family two component transcriptional regulator NC_007793.3914279.p0 Protein 5e-47 50
Cyan7822_0012 YP_003885341.1 winged helix family two component transcriptional regulator NC_007622.3794472.p0 Protein 4e-47 50
Cyan7822_0012 YP_003885341.1 winged helix family two component transcriptional regulator NC_002745.1124361.p0 Protein 5e-47 50
Cyan7822_0012 YP_003885341.1 winged helix family two component transcriptional regulator NC_009782.5559369.p0 Protein 5e-47 50
Cyan7822_0012 YP_003885341.1 winged helix family two component transcriptional regulator NC_002951.3237708.p0 Protein 5e-47 50
Cyan7822_0012 YP_003885341.1 winged helix family two component transcriptional regulator NC_002758.1121668.p0 Protein 5e-47 50
Cyan7822_0012 YP_003885341.1 winged helix family two component transcriptional regulator NC_003923.1003749.p0 Protein 7e-47 49
Cyan7822_0012 YP_003885341.1 winged helix family two component transcriptional regulator AE000516.2.gene3505. Protein 3e-44 46
Cyan7822_0012 YP_003885341.1 winged helix family two component transcriptional regulator NC_012469.1.7685629. Protein 3e-43 46
Cyan7822_0012 YP_003885341.1 winged helix family two component transcriptional regulator HE999704.1.gene2815. Protein 1e-41 46
Cyan7822_0012 YP_003885341.1 winged helix family two component transcriptional regulator BAC0125 Protein 4e-39 45
Cyan7822_0012 YP_003885341.1 winged helix family two component transcriptional regulator CP000034.1.gene3671. Protein 8e-40 45
Cyan7822_0012 YP_003885341.1 winged helix family two component transcriptional regulator BAC0083 Protein 2e-36 42
Cyan7822_0012 YP_003885341.1 winged helix family two component transcriptional regulator CP001918.1.gene5135. Protein 2e-25 42
Cyan7822_0012 YP_003885341.1 winged helix family two component transcriptional regulator NC_012469.1.7686381. Protein 1e-40 42
Cyan7822_0012 YP_003885341.1 winged helix family two component transcriptional regulator BAC0638 Protein 2e-28 42
Cyan7822_0012 YP_003885341.1 winged helix family two component transcriptional regulator NC_013450.8614146.p0 Protein 2e-36 41
Cyan7822_0012 YP_003885341.1 winged helix family two component transcriptional regulator NC_002951.3238224.p0 Protein 2e-36 41
Cyan7822_0012 YP_003885341.1 winged helix family two component transcriptional regulator NC_007793.3914065.p0 Protein 2e-36 41
Cyan7822_0012 YP_003885341.1 winged helix family two component transcriptional regulator NC_002758.1121390.p0 Protein 2e-36 41
Cyan7822_0012 YP_003885341.1 winged helix family two component transcriptional regulator NC_010079.5776364.p0 Protein 2e-36 41
Cyan7822_0012 YP_003885341.1 winged helix family two component transcriptional regulator NC_002952.2859858.p0 Protein 2e-36 41
Cyan7822_0012 YP_003885341.1 winged helix family two component transcriptional regulator NC_007622.3794948.p0 Protein 2e-36 41
Cyan7822_0012 YP_003885341.1 winged helix family two component transcriptional regulator NC_003923.1003417.p0 Protein 2e-36 41
Cyan7822_0012 YP_003885341.1 winged helix family two component transcriptional regulator CP000675.2.gene1535. Protein 5e-38 41
Cyan7822_0012 YP_003885341.1 winged helix family two component transcriptional regulator DQ212986.1.gene4.p01 Protein 1e-32 41
Cyan7822_0012 YP_003885341.1 winged helix family two component transcriptional regulator CP004022.1.gene3215. Protein 6e-34 41
Cyan7822_0012 YP_003885341.1 winged helix family two component transcriptional regulator BAC0533 Protein 3e-29 41
Cyan7822_0012 YP_003885341.1 winged helix family two component transcriptional regulator BAC0197 Protein 1e-33 41
Cyan7822_0012 YP_003885341.1 winged helix family two component transcriptional regulator CP000034.1.gene3834. Protein 2e-28 41
Cyan7822_0012 YP_003885341.1 winged helix family two component transcriptional regulator CP000647.1.gene4257. Protein 3e-29 41
Cyan7822_0012 YP_003885341.1 winged helix family two component transcriptional regulator NC_002695.1.915041.p Protein 2e-28 41
Cyan7822_0012 YP_003885341.1 winged helix family two component transcriptional regulator CP001138.1.gene4273. Protein 1e-28 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cyan7822_0012 YP_003885341.1 winged helix family two component transcriptional regulator VFG1390 Protein 1e-39 44
Cyan7822_0012 YP_003885341.1 winged helix family two component transcriptional regulator VFG0596 Protein 3e-31 43
Cyan7822_0012 YP_003885341.1 winged helix family two component transcriptional regulator VFG1389 Protein 6e-34 43
Cyan7822_0012 YP_003885341.1 winged helix family two component transcriptional regulator VFG1386 Protein 2e-36 41