Gene Information

Name : yjdB (Dda3937_00525)
Accession : YP_003884867.1
Strain : Dickeya dadantii 3937
Genome accession: NC_014500
Putative virulence/resistance : Resistance
Product : hypothetical protein
Function : -
COG functional category : R : General function prediction only
COG ID : COG2194
EC number : -
Position : 4399533 - 4401176 bp
Length : 1644 bp
Strand : +
Note : -

DNA sequence :
ATGTTTAAAATGTCTCGTCTCTCCCGCCCCGTCTGGAGCAGCTTTACCTATAACCTGGTGTTCGCTGCTTTCATTACCCT
GATACAAAATATCGCTTACTACCGCCAGGTTTCACATCTGGTCGCTATCAATACCTGGCGGGATGGATTATTCCTGGCCA
CCATGCCTGTAGTCATTTTTGCGGTACTGAATGTTCTGTTCGCCCTGCTGTTCATTTCCTGGCTGCGTCAGGGCGTGGTC
GCTCTGCTGCTGGTTGGCGGTGCGGCGGTACAATATTTCATGATCAACTACGGCATCATCATCGACCGTACCATGATGCA
GAATGTGTTCGAAACCAACATGGCGGAATCCATGGCGCTGGTGACGCCGCAGTATCTGCTCTGGTTGACGCTGCTGGGCA
TCGTTCCCGCGCTGGGCGCGCTGTGGGTTAAAATCAAACCGACGCCGTTAAGCTGGGTCACGATTGGCGCCCGCTGCTTC
AGCATCCTGATGTCGATTGTCGCAATTCTGCTGGTCGCCACCTTTTTCTATAAAGATTACGCCTCGCTGATGCGAAATAA
TAAGGAGCTGGTGAAATCGCTGACCCCCAGCAATATTATTTTCGCCAACATTTCTTATTACCGTCATCGCGCGCAGGCCA
ATTTGCCGCTGGTGCAAATCGGGTTGGATGCGCATAAAAAGCCGCTGGCGAGCGGCGATGCCAAAAAGAATCTGGTGATT
CTGGTCGTGGGGGAAACGTCCCGTGCCGAGAACTTTTCGCTCGGCGGCTACGACAAGCCCACCAACCCGCGGCTGGCCAA
CGATAATGTGCTCTATTTCAGTCAGACGGCGTCCTGCGGCACCTCTACCGGGGTTTCCGTTCCCTGTATGTTCTCCAACA
TGCCGCGCGCCGGCTACGATGAACAACTGGCCGCCCATCAGGAAGGATTGCTGGATGTGCTGCAACACGCCGGCGTCAAC
GTTCGCTGGCAGGAGAACGACGGCGGCTGCAAAGGCGCCTGCGATCGCGTGCCAAGTACGGATATCACCGCGCTGAATCT
GCCTGACCAGTGCAGTGGTGGGGAGTGCCATGACGAAGCATTGTTTAGCGGCGTCGAAGATTACATCAATCAGTTGAACA
ACGACGGCATCATTGTGCTGCATACGATGGGCAGCCACGGGCCGGCTTATTACCAGCGCTATCCCGACGACTTTCGAAAA
TTCACCCCGACCTGCGATACCAATCAGATCCAGACATGCTCGCGAGAATCATTAATCAATACTTACGATAATACGATTCT
CTACGTAGACTATATTGTTGATAAGGCAATTAATGTCTTGAAAGGGCATCAGGATAAATTTAACACCGCTTTGGTTTATC
TTTCCGACCACGGCGAGTCACTGGGCGAAGACGGGATTTACCTGCACAGCATGCCGTACGCGGTCGCGCCCACACAACAA
ACCCATATCCCGATGCTGATGTGGCTTTCCGGCGGCTATCAGCAACAGTTCTCCATCGACGACAGTTGCATGCGCAAGCA
AGCCGGCCAGCAACGTTTTTCCCAGGACAATCTGTTCCATACCGTTCTGGGCATGTTTAACATTGCGACAAAGGAATATC
AGGCGCCGCTTGATATTCTTCAACCGTGTCGGGGCACTTCATGA

Protein sequence :
MFKMSRLSRPVWSSFTYNLVFAAFITLIQNIAYYRQVSHLVAINTWRDGLFLATMPVVIFAVLNVLFALLFISWLRQGVV
ALLLVGGAAVQYFMINYGIIIDRTMMQNVFETNMAESMALVTPQYLLWLTLLGIVPALGALWVKIKPTPLSWVTIGARCF
SILMSIVAILLVATFFYKDYASLMRNNKELVKSLTPSNIIFANISYYRHRAQANLPLVQIGLDAHKKPLASGDAKKNLVI
LVVGETSRAENFSLGGYDKPTNPRLANDNVLYFSQTASCGTSTGVSVPCMFSNMPRAGYDEQLAAHQEGLLDVLQHAGVN
VRWQENDGGCKGACDRVPSTDITALNLPDQCSGGECHDEALFSGVEDYINQLNNDGIIVLHTMGSHGPAYYQRYPDDFRK
FTPTCDTNQIQTCSRESLINTYDNTILYVDYIVDKAINVLKGHQDKFNTALVYLSDHGESLGEDGIYLHSMPYAVAPTQQ
THIPMLMWLSGGYQQQFSIDDSCMRKQAGQQRFSQDNLFHTVLGMFNIATKEYQAPLDILQPCRGTS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z1140 NP_286675.1 hypothetical protein Not tested TAI Protein 9e-93 43
Z1579 NP_287083.1 hypothetical protein Not tested TAI Protein 9e-93 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yjdB YP_003884867.1 hypothetical protein BAC0485 Protein 1e-176 68