Gene Information

Name : Dda3937_00938 (Dda3937_00938)
Accession : YP_003884289.1
Strain : Dickeya dadantii 3937
Genome accession: NC_014500
Putative virulence/resistance : Unknown
Product : Integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 3763439 - 3764653 bp
Length : 1215 bp
Strand : -
Note : -

DNA sequence :
ATGAAACTCAATGCCAGGCAGGTAGACACCGCCAAACCTAAAGACAAGCCCTATAAACTCTCGGATGGAGGTGGGCTGTA
TCTGTTGGTGAATCCGAATGGCTCGCGTTACTGGCGCTTGAAGTACCGTGTCGATGGAAAAGAAAAATTGCTGGCGCTGG
GGGTTTATCCCGCAATTTCACTGGCGCAAGCCAGAGGAAAACGTGACGAAGCGAAAAGGGGTATCGCTGGGGGTATCGAC
CCGAATGTTGCCAGACGCGAGGAAAAAATCGCGCGCGAGGCGCAGATAAAAAACACCTTTCAGGATATCGCGCTGGAATG
GCACGCCAGCAAAATCAAAAAATGGTCGGCGGGCTATGCTTCCGACATTATGGAAGCCTTCAATAAAGACGTTTTTCCGT
ATATTGGCAACAAGCCGATTGCTCAGATTAAACCGCTTGAACTGCTGAACGTGCTACGGCGCATGGAGTCTCGCGGAGCC
ACAGAGAAAGCCAAGAAGGTTCGCCAGCGCTGTGGCGAAGTGTTTCGCTACGCCATCGTTACCGGTCGGGCCGAGTATAA
CCCCGCGCCGGATCTCACCAGTGCCATGCAGGGGCATGAATCCAGCCATTACCCCTTTCTGAATGCACAGGAACTGCCGG
AATTCTTTCATGCCTTGTCTGAGTATACCGGTAGCAAATTGGTGCTGCTGGCGGCCCGTTTGCTGATTCTAACCGGTGTG
CGCACCGGTGAACTCAGAGCGGCGAACTGGCAGGAGATAGACACCGAGAATGCGCGATGGGAAATCCCCGCTGAACGCAT
GAAGATGCGACGCCCCCATTGTGTGCCGCTTTCCCGTCAGGCTATCGCTATCCTTGACGAGATCAGGGAAATGACCGGTC
GATATCCATTGGTATTTCCCGGCCGTAACGACCCCCGCAACACCATGAGTGAAGCCAGCATTAATCAGGTCTTCAAGCGT
ATTGGTTATGCCGGTAGAGTCACTGGCCACGGTTTTCGGCACACCATGAGCACCATTCTCCACGAACAGGGCTACAACAC
CGCATGGATTGAAACCCAGCTTGCCCACGTTGATAAAAACGCTATCCGTGGCACCTACAACCATGCGCAATATCTCGATG
GCAGACGCGAGATGCTGCAATGGTATGCTGACTATATGGAAAGCCTTGAAAACGGCGGCAATGTGATGCGTGGACAGTTT
GGCCGATATCTTTGA

Protein sequence :
MKLNARQVDTAKPKDKPYKLSDGGGLYLLVNPNGSRYWRLKYRVDGKEKLLALGVYPAISLAQARGKRDEAKRGIAGGID
PNVARREEKIAREAQIKNTFQDIALEWHASKIKKWSAGYASDIMEAFNKDVFPYIGNKPIAQIKPLELLNVLRRMESRGA
TEKAKKVRQRCGEVFRYAIVTGRAEYNPAPDLTSAMQGHESSHYPFLNAQELPEFFHALSEYTGSKLVLLAARLLILTGV
RTGELRAANWQEIDTENARWEIPAERMKMRRPHCVPLSRQAIAILDEIREMTGRYPLVFPGRNDPRNTMSEASINQVFKR
IGYAGRVTGHGFRHTMSTILHEQGYNTAWIETQLAHVDKNAIRGTYNHAQYLDGRREMLQWYADYMESLENGGNVMRGQF
GRYL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 1e-136 72
aec33 AAW51716.1 Int Not tested AGI-3 Protein 5e-128 64
int CAC39282.1 integrase Not tested LPA Protein 2e-128 64
int AAC31482.1 CP4-like integrase Not tested LEE Protein 9e-128 63
int ACU09430.1 integrase Not tested LEE Protein 9e-128 63
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 1e-127 63
ECs4534 NP_312561.1 integrase Not tested LEE Protein 1e-127 63
int AAD44730.1 Int Not tested SHI-2 Protein 1e-126 63
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 1e-126 63
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 2e-126 63
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 2e-126 63
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 2e-122 61
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 2e-74 43
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 1e-76 43
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 5e-77 43
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 3e-76 43
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 7e-77 43
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 3e-76 43
int AAK16198.1 Int Not tested PAI-I AL862 Protein 2e-76 43
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 1e-76 43
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 2e-76 43
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 9e-77 43
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 5e-75 43
int AAL51028.1 CP4-like integrase Not tested LEE Protein 9e-77 43
int-phe AAL60261.1 Int-phe Not tested LEE Protein 9e-77 43
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 2e-76 43
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 2e-76 43
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 2e-76 43
int AAL51003.1 CP4-like integrase Not tested LEE Protein 2e-76 43
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 1e-76 43
intA AAB00935.1 integrase A Not tested vap locus Protein 4e-60 42
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 3e-72 42
int AAK00456.1 Int Not tested SHI-1 Protein 7e-69 42
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 5e-76 42
int CAC81896.1 integrase Not tested LEE II Protein 3e-69 42
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 1e-72 42
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 1e-72 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dda3937_00938 YP_003884289.1 Integrase VFG0783 Protein 5e-128 63
Dda3937_00938 YP_003884289.1 Integrase VFG0598 Protein 7e-127 63
Dda3937_00938 YP_003884289.1 Integrase VFG0626 Protein 1e-76 43
Dda3937_00938 YP_003884289.1 Integrase VFG1693 Protein 1e-76 43