Gene Information

Name : cbsE (Dda3937_02433)
Accession : YP_003883913.1
Strain : Dickeya dadantii 3937
Genome accession: NC_014500
Putative virulence/resistance : Virulence
Product : 2,3-dihydroxybenzoate-AMP ligase
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG1021
EC number : -
Position : 3378851 - 3380479 bp
Length : 1629 bp
Strand : +
Note : -

DNA sequence : 
ATGATGATTGAATTCACCCGCTGGCCGCCCGAGCTGGAACAGCGCTACCGCGACCGGGGTTACTGGCAGGATCTGCCGCT
GGGCGACATCCTCGCCCGACATGCCGACAGCGACGATACCGCCTTGATCTGCGGCGAGCGCACGCTCAGTTACCGCCAGA
TGAACCAGCAGGTGGCGCAACTAGCCGGCGCGCTGCAACGTCGGGGGTTAAAGCCGGGGCAGACCGCGCTGGTACAGTTA
GGCAACGTTGCCGAATTCTATCTGACTTACTTCGCGCTGTTGCGCGCCGGCATCGTGCCGGTGAACGCGCTGTTCAGCCA
TCAACGCAGCGAACTGTGCGCCTACGCCGACCAGATCGCCCCAACGCTGTTGATCGCCGATCGCGGCCATCTGCTGTTTG
CCGACGATAGCTTTATCGACGAACTGCGCCAGCGCTGCCCGTCGCTACAGCAGGTGATTCTGCGCGGCGATGCTGACTCG
GCACAGGCGCTGTCGCAACTGTTGCAGGAAGACGGCGACCCGCAGGCCGCCACGCCGACGCCCGCCGATCAGGTGGCGTT
TTTCCAGCTTTCCGGCGGCAGCACCGGTACGCCAAAGTTAATCCCCCGTACCCACAACGATTACTACTACAGCATTCGCG
GCAGCGTGGAGATTTGCCGGGTTGACGCGCACACCCGCTTTCTGTGCGCCCTGCCCGCCGCCCATAACTACCCGCTCAGT
TCGCCGGGCGCGCTGGGCGTGTTCTATGCCGGCGGCACGGTGGTGCTGGCGGGCGACCCCAGCCCGACCTGCTGCTTCCC
GCTGATTGCACAACACCGCATCACGCTGACCGCGCTGGTGCCGCCCGCCGTCACACTGTGGCTGGAAGCGGTGGCGTTAT
CCGGCGATCGCAGTGCGCTGGCGAGCCTGCTGGTATTGCAAGTCGGCGGCGCCCGCCTGAGCGAAGCGCTGGCGCGGCGA
GTGCCGGCGGAGCTGGGCTGCCAGTTGCAACAGGTGTTCGGCATGGCGGAAGGACTGGTGAACTATACCCGGCTGGACGA
CGACGATATCCACCGCTTCACCACCCAGGGCTGCCCTATCAGCGACGATGACGAAGTATGGGTGGCCGATGCCTACGGCA
ATCCGCTGCCGCATGGCGAGCCGGGCCGTCTGATGACGCGCGGGCCCTACACCTTTCGCGGCTACTACCGCAGCCCGGCG
CACAACCGTCAGGTGTTTAACGACGACGGTTTCTATTGCTCCGGCGATCTGGTGATCCAGCAGGCTGACGGCTACCTACA
GGTGGTGGGACGCGAAAAAGATCAGATCAACCGGGGCGGGGAAAAGATCGCCGCCGAGGAGATCGAAAACCTGCTGCTGC
GCCACCCGGCGGTGATCAACGCGGCGCTGGTGGCGGTGCCCGACACCATGATGGGCGAAAAAAGCTGCGCTTTTCTGGTC
ACCCGCGAACCGCTCAAAGCGGCGGCGCTGCGTCGTCATCTGCGCGAACAAGGCATCGCCGACTACAAACTGCCGGACCG
ATTTGAACAACTGCCCACCCTGCCGGAAACCGCGGTGGGCAAAGTCGATAAACAGCGGCTACGCCAGCTGGCGCAACAGC
GCGTGGCGGCGCCCACCGCAGGAGAATAA

Protein sequence : 
MMIEFTRWPPELEQRYRDRGYWQDLPLGDILARHADSDDTALICGERTLSYRQMNQQVAQLAGALQRRGLKPGQTALVQL
GNVAEFYLTYFALLRAGIVPVNALFSHQRSELCAYADQIAPTLLIADRGHLLFADDSFIDELRQRCPSLQQVILRGDADS
AQALSQLLQEDGDPQAATPTPADQVAFFQLSGGSTGTPKLIPRTHNDYYYSIRGSVEICRVDAHTRFLCALPAAHNYPLS
SPGALGVFYAGGTVVLAGDPSPTCCFPLIAQHRITLTALVPPAVTLWLEAVALSGDRSALASLLVLQVGGARLSEALARR
VPAELGCQLQQVFGMAEGLVNYTRLDDDDIHRFTTQGCPISDDDEVWVADAYGNPLPHGEPGRLMTRGPYTFRGYYRSPA
HNRQVFNDDGFYCSGDLVIQQADGYLQVVGREKDQINRGGEKIAAEEIENLLLRHPAVINAALVAVPDTMMGEKSCAFLV
TREPLKAAALRRHLREQGIADYKLPDRFEQLPTLPETAVGKVDKQRLRQLAQQRVAAPTAGE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
irp5 CAA73130.1 Irp5 protein Virulence HPI Protein 3e-84 43
irp5 YP_001006819.1 yersiniabactin siderophore biosynthetic protein Virulence HPI Protein 4e-84 43
ybtE NP_669710.1 salicyl-AMP ligase Virulence HPI Protein 1e-85 42
ybtE NP_993003.1 yersiniabactin siderophore biosynthetic protein Virulence HPI Protein 1e-85 42
ybtE YP_070120.1 yersiniabactin siderophore biosynthetic protein Virulence HPI Protein 1e-85 42
ybtE CAA21394.1 - Virulence HPI Protein 1e-85 42
ybtE YP_853079.1 yersiniabactin siderophore biosynthetic protein Virulence PAI IV APEC-O1 Protein 7e-86 42
ybtE AAA93464.1 yersiniabactin 2,3-dihydoxybenzoate-AMP ligase Virulence HPI Protein 7e-86 42
irp5 YP_002346898.1 yersiniabactin siderophore biosynthetic protein Virulence HPI Protein 1e-85 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cbsE YP_003883913.1 2,3-dihydroxybenzoate-AMP ligase VFG0932 Protein 1e-173 67
cbsE YP_003883913.1 2,3-dihydroxybenzoate-AMP ligase VFG0168 Protein 6e-104 47
cbsE YP_003883913.1 2,3-dihydroxybenzoate-AMP ligase VFG1817 Protein 2e-83 41