Gene Information

Name : alpA (Dda3937_02760)
Accession : YP_003883704.1
Strain : Dickeya dadantii 3937
Genome accession: NC_014500
Putative virulence/resistance : Virulence
Product : DNA-binding protein
Function : -
COG functional category : K : Transcription
COG ID : COG3311
EC number : -
Position : 3142932 - 3143126 bp
Length : 195 bp
Strand : +
Note : -

DNA sequence : 
ATGACATCGCATCAGTTATTGCGTTTGAGACAAGTGGAAGAAAAAACCGGCCTGAAGCGCTCGCAAATCTATCTGTATAT
GAAGTACGGAACCTTTCCGGCCTCAATAAAGATTGGTCCTGCCAGCGTCGCCTGGCTCGAATCTGAAATTGACGAATGGA
TTAACTTCAAATTAGCTAACCGCTTAACGCGCTGA

Protein sequence : 
MTSHQLLRLRQVEEKTGLKRSQIYLYMKYGTFPASIKIGPASVAWLESEIDEWINFKLANRLTR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
PMI2608 YP_002152324.1 prophage regulatory protein Not tested Not named Protein 1e-19 89
unnamed CAB46594.1 DNA-binding protein Not tested HPI Protein 2e-19 87
unnamed CAA21398.1 - Not tested HPI Protein 3e-19 87
VC1785 NP_231420.1 transcriptional regulator Not tested VPI-2 Protein 7e-10 50
VC0395_A1382 YP_001217325.1 transcriptional regulator Not tested VPI-2 Protein 7e-10 50
VPI2_0033 AAX20900.1 transcriptional regulator Not tested VPI-2 Protein 5e-10 50
VC0497 NP_230151.1 transcriptional regulator Not tested VSP-2 Protein 1e-07 49
ORF SG104 AAN62325.1 phage-related protein Not tested PAGI-3(SG) Protein 8e-10 46
ORF C109 AAN62202.1 phage-related protein Not tested PAGI-2(C) Protein 3e-09 42
VPI2_0041 ACA01856.1 predicted transcriptional regulator Not tested VPI-2 Protein 1e-08 41
VC1809 NP_231443.1 transcriptional regulator Not tested VPI-2 Protein 2e-08 41
VC0395_A1406 YP_001217349.1 transcriptional regulator Not tested VPI-2 Protein 2e-08 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
alpA YP_003883704.1 DNA-binding protein VFG1118 Protein 2e-10 50
alpA YP_003883704.1 DNA-binding protein VFG1141 Protein 5e-09 41