Gene Information

Name : Dda3937_00080 (Dda3937_00080)
Accession : YP_003883684.1
Strain : Dickeya dadantii 3937
Genome accession: NC_014500
Putative virulence/resistance : Unknown
Product : Integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 3126671 - 3127954 bp
Length : 1284 bp
Strand : +
Note : -

DNA sequence : 
ATGTCTCTTAACGACTCAAAAATCCGCAACTTAAAACCATCCGCAAAACCCTTCAAAGTTTCCGATTCTCACGGTCTGTA
CCTTTTAGTTAATCCAGGCGGTTCACGTCTCTGGTATCTCAAATATCGTATCAATAGAAAAGAATCCCGCCTCGGTTTAG
GTACCTACCCCGATGTATCGCTGGCCGATGCGCGTCAACAGCGTGACGGCATCCGTAAACTGCTGGCGCAGAATATCAAC
CCCGCGCACCAACGGGCGGCAGAAAAAGCGTCCCGCTCACCAGAAAAATCATTCAGGGACGTAGCGCTGGACTGGCACAA
GAGCAACCGGACATGGTCAGAGAACCACGCCACTCGCCTGCTCGCCAGTATGAACAACTATCTCTTTCCTGTTATCGGGC
ACCTGCCCGTCACGGAGCTGAAACCCCGTCACTTCATCGACCTGCTGAGAGGCATCGAGAAAAAAGGCCTGCTGGAAGTG
GCATCCCGTACCCGGCAGCATCTGTGCAACATCATGCGTCATGCCGTGCATCAGGAATTGATAGAACACAATCCGGCGGC
CAATCTGGACGGAATTATCGCCACGCCGGTTAAACGCCACTACCCTGCCCTGCCGCTGGAACAACTACCGGAACTGTTGA
CGCGCATTGAGGACTACCGGCAAGGACGGGAGTTAACCCGGCTGGCCGTATCACTCACTCTGCATCTGTTCATCCGTTCC
AGCGAACTGCGCTTCGCTCGCTGGTCGGAAATTGATTTCAGAAATAACATCTGGACTATTCCCGCCACCCGCAAAGCCAT
CCCCGGCGTGCGTTATTCCGGGCGTGGCGCGAAGATGCGTACCCCGCATATCGTTCCCCTCTCCCGGCAAACCATCGCTA
TTCTGAGACAGATACAGGAAATCTCCAGGCATCAGGTGCTGATATTTCCCGGCGCTCACAATCCGTATAAGCCGATGTGC
GAAAACACGGTCAACAAGGCACTAAGACTGATGGGTTATGACACGAAAGATGAAATCTGCGGTCATGGATTCCGGGCAAT
GGCCTGTAGCGCGCTGATGGAATCCGGCCTGTGGTCGCAGGATGCGGTTGAGCGCCAGATGAGCCATCAGGAGCGCAACA
GCGTTCGAGCAGCTTACATCCATAAAGCGCAATATCTCGATGCCCGTAAAGCGATGATGCAATGGTGGTCGGATTATCTG
GACATGAACCGGGAAGGATACGTTGCGCCCTATGTTTATGCGCGAGAATGCAGGGAGCGCGCAGTAAACTTTATCATCGG
TTAG

Protein sequence : 
MSLNDSKIRNLKPSAKPFKVSDSHGLYLLVNPGGSRLWYLKYRINRKESRLGLGTYPDVSLADARQQRDGIRKLLAQNIN
PAHQRAAEKASRSPEKSFRDVALDWHKSNRTWSENHATRLLASMNNYLFPVIGHLPVTELKPRHFIDLLRGIEKKGLLEV
ASRTRQHLCNIMRHAVHQELIEHNPAANLDGIIATPVKRHYPALPLEQLPELLTRIEDYRQGRELTRLAVSLTLHLFIRS
SELRFARWSEIDFRNNIWTIPATRKAIPGVRYSGRGAKMRTPHIVPLSRQTIAILRQIQEISRHQVLIFPGAHNPYKPMC
ENTVNKALRLMGYDTKDEICGHGFRAMACSALMESGLWSQDAVERQMSHQERNSVRAAYIHKAQYLDARKAMMQWWSDYL
DMNREGYVAPYVYARECRERAVNFIIG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
APECO1_1051 YP_853069.1 phage integrase Not tested PAI IV APEC-O1 Protein 2e-117 78
int CAA21384.1 - Not tested HPI Protein 1e-158 78
int CAA08754.1 integrase Not tested HPI Protein 3e-159 78
int CAB59974.1 integrase Not tested HPI Protein 1e-159 78
int YP_002346908.1 integrase Not tested HPI Protein 1e-158 78
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 1e-158 78
int2 NP_993013.1 integrase Not tested HPI Protein 1e-158 78
intB AAD37509.1 P4-like integrase Not tested PAI IV 536 Protein 6e-127 77
unnamed AAD17660.1 unknown Not tested HPI Protein 3e-155 76
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 1e-122 58
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 1e-122 58
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 2e-115 58
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 2e-115 58
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 7e-108 56
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 9e-111 55
int AAK00456.1 Int Not tested SHI-1 Protein 3e-103 55
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 3e-111 55
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 9e-112 55
int AAL51003.1 CP4-like integrase Not tested LEE Protein 6e-112 55
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 4e-110 54
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 2e-110 54
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 7e-111 54
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 3e-110 54
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 7e-111 54
int AAL51028.1 CP4-like integrase Not tested LEE Protein 2e-111 54
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 3e-111 54
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 2e-109 54
int-phe AAL60261.1 Int-phe Not tested LEE Protein 2e-111 54
int AAK16198.1 Int Not tested PAI-I AL862 Protein 7e-112 54
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 1e-110 54
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 7e-112 54
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 5e-112 54
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 2e-111 54
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 3e-111 54
int CAC81896.1 integrase Not tested LEE II Protein 2e-103 54
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 3e-103 50
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 9e-96 48
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 4e-67 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dda3937_00080 YP_003883684.1 Integrase VFG1536 Protein 4e-108 56
Dda3937_00080 YP_003883684.1 Integrase VFG1693 Protein 1e-111 55
Dda3937_00080 YP_003883684.1 Integrase VFG0626 Protein 3e-111 54