|
Name : pspF (Dda3937_03115) Accession : YP_003883405.1 Strain : Dickeya dadantii 3937 Genome accession: NC_014500 Putative virulence/resistance : Virulence Product : DNA-binding transcriptional activator Function : - COG functional category : K : Transcription COG ID : COG1221 EC number : - Position : 2828921 - 2829916 bp Length : 996 bp Strand : + Note : PspF possesses a sigma 54 activation domain DNA sequence : ATGGCGCACGAGCAAGAGTCGTTACTGGGCGAAGCCAACAGTTTTCTGGAAGTGCTGGAACAGGTATCGCAACTGGCGCA GCTCAACAAACCGGTGCTGGTGATTGGCGAGCGGGGAACCGGTAAGGAACTGATTGCCAGCCGTCTGCATTACCTGTCGC CCCGTTGGCAGGGACCGTTCATTTCGCTCAACTGCGCGGCGCTGAACGAGAACCTGTTGGATTCCGAACTGTTCGGCCAT GAAGCCGGCGCCTTCACCGGCGCGCAAAAGCGGCATCTGGGCCGTTTTGAGCGCGCCGACGGCGGCACCCTGTTTCTGGA TGAACTGGCCACCGCGCCGATGCTGGTTCAGGAGAAGCTGTTGCGGGTGATCGAATACGGCGTGCTGGAGCGCGTGGGCG GCGGGCAGTCGCTACAGGTGGATGTGCGGCTGGTGTGCGCCACCAACGAAGACCTGCCCACGCTGGCTGCGCAGGGGAAA TTTCGCGCCGACCTGCTGGACCGGCTGGCGTTCGACGTGGTTCACCTGCCGCCGCTGCGTCAGCGCCAGCAGGACATCAT GTTGCTGGCGCAGCATTTCGCGGTGCAGATGTGTCGGGAGCTGGGGCTGCCGCTGTTCCCCGGCTTCAGCCCGCAGGCGG AGCGCACGCTGCTGGATTACGCCTGGCCGGGCAACATCCGCGAGCTGAAAAATGTGGTGGAACGTTCGCTGTACCGGCAC GGCGATAGCCGCGAACCGGTGAATCGCATTATCCTCAATCCGTTCAAGCCGCTGGCCGCGTTCACGCCCGAGAAGGCAAC CGCAGCCGCACAGGCGTCGCTCCCGACGCTGCCGCTGGACCTGCGCGACTGGCAGCATGTTCAGGAACGGCAACTGGTGC AGCAGGCGCTGACGCAGGCTCGCTTCAACCAGCGCAAGGCGGCCGAACTCTTAGGGGTGACTTACCACCAGTTTCGCGGC CTGTTAAAGAAACACGCCATCAATGACAATGAATGA Protein sequence : MAHEQESLLGEANSFLEVLEQVSQLAQLNKPVLVIGERGTGKELIASRLHYLSPRWQGPFISLNCAALNENLLDSELFGH EAGAFTGAQKRHLGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGVLERVGGGQSLQVDVRLVCATNEDLPTLAAQGK FRADLLDRLAFDVVHLPPLRQRQQDIMLLAQHFAVQMCRELGLPLFPGFSPQAERTLLDYAWPGNIRELKNVVERSLYRH GDSREPVNRIILNPFKPLAAFTPEKATAAAQASLPTLPLDLRDWQHVQERQLVQQALTQARFNQRKAAELLGVTYHQFRG LLKKHAINDNE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AAT96283.1 | HrpS/HrpR-like protein | Not tested | S-PAI | Protein | 8e-35 | 43 |
| unnamed | AAT96324.1 | HrpS/HrpR-like protein | Virulence | S-PAI | Protein | 8e-35 | 43 |
| unnamed | AAT96363.1 | HrpS/HrpR-like protein | Virulence | S-PAI | Protein | 6e-35 | 43 |
| hrpRS | ABA47311.1 | HrpRS | Virulence | S-PAI | Protein | 6e-34 | 42 |
