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Name : hrcU (Dda3937_00618) Accession : YP_003883249.1 Strain : Dickeya dadantii 3937 Genome accession: NC_014500 Putative virulence/resistance : Virulence Product : type III secretion inner membrane protein Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4792 EC number : - Position : 2660689 - 2661768 bp Length : 1080 bp Strand : + Note : E. coli containing D. dadantii hrp cluster is capable of secreting an exogenous effector into tobacco, eliciting a hypersensitive response DNA sequence : ATGAGTGAAAAAACCGAAAAACCCACCCCCAAAAAGTTGCAGGACGCTCGCAAGAAAGGGGAAGTGGGCCAGAGCCAGGA TGTGCCCAAGCTGCTGATCAGTTTCGCGTTGCTGGAGATGATTCTGGCGCTGACCGACAGCGGCATGAGCAAATTGCAGG CGCTGATGCAACTGCCGTTGAGCCGCATCACCGACCCGTTCGGGCATGCGGCGGATGAAATTTTCAGCGAAGCGCTGTCG CTGCTGACCACTTTTTGCCTGTTGACCATCAGCGTGGCGCTGCTGATGCGCCTCGTTGGCGGTTGGATCCAGTACGGCCC GCTGTTTGCCGTCGAGGCGCTGAAAATTGATTTCAACCGTCTCAATCCGATCAACCAGATCAAGCAAATGTTCACCATGC GCAAGCTCACCGACATGCTGACCAACATCCTGAAGGCGGTGACCATCGGGCTGGTGTTCTGGCTGGTGGTGATGCCGCAG CTGGAGTGGCTGGTGGAACTGGCTTACGGCGATCTGACCACGTTCTGGAAAGGGGTGGAAAACGTGCTGAAAAGCGTGGC GCGCACCACCCTTTCCGCGTTGCTGGCGTTGGGAGTGCTCGACTTCGGGCTGCAAAAATATTACTTCCTCAAACAGCAGC GCATGAGCCATGAAGATATCCGCAACGAGTTCAAAAACTCGGAAGGCGACCCGCACATGAAAGGCCATCGTAAATCGGTG GCGCAGGAGATCCTCAACGAACCGGCCAGCCCGCGCGTCAAACCCAAAGTGGAAGACGCCGATCTACTGCTGGTCAACCC GACCCACTACGCGGTGGCGCTGTTCTACCGCCCCGGCAAAACGCCGCTGCCGCGCATCCTGCTCAAGGGCGAAGACGATC AGGCCAAAGCGTTGATTGCCCGCGCCCATCAGGCCGGCGTGCCGGTGATCCGCTTCATCTGGCTGGCGCGCACCCTGTAC CGGATACCGGAAGGCCACTACATCCCGCGCGACACCCTGCAACCGGTGGCGCAGGTCTATAAGGTATTACGTCAATTGGA GAAAGGCCTGCCGGCACGCGATGTGATCGAGATGGGTTAA Protein sequence : MSEKTEKPTPKKLQDARKKGEVGQSQDVPKLLISFALLEMILALTDSGMSKLQALMQLPLSRITDPFGHAADEIFSEALS LLTTFCLLTISVALLMRLVGGWIQYGPLFAVEALKIDFNRLNPINQIKQMFTMRKLTDMLTNILKAVTIGLVFWLVVMPQ LEWLVELAYGDLTTFWKGVENVLKSVARTTLSALLALGVLDFGLQKYYFLKQQRMSHEDIRNEFKNSEGDPHMKGHRKSV AQEILNEPASPRVKPKVEDADLLLVNPTHYAVALFYRPGKTPLPRILLKGEDDQAKALIARAHQAGVPVIRFIWLARTLY RIPEGHYIPRDTLQPVAQVYKVLRQLEKGLPARDVIEMG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcU | AAB06008.1 | HrcU | Virulence | Hrp PAI | Protein | 9e-116 | 67 |
| hrcU | ABA47282.1 | HrcU | Virulence | S-PAI | Protein | 5e-100 | 59 |
| hrcU | AAT96346.1 | HrcU | Virulence | S-PAI | Protein | 7e-94 | 58 |
| hrcU | AAT96306.1 | HrcU | Virulence | S-PAI | Protein | 2e-96 | 58 |
| hrcU | AAT96265.1 | HrcU | Virulence | S-PAI | Protein | 1e-96 | 58 |
| hrcU | AAT96203.1 | HrcU | Virulence | T-PAI | Protein | 4e-91 | 54 |
| hrcU | ABQ88362.1 | HrcU | Virulence | Hrp PAI | Protein | 1e-88 | 54 |
| hrpY | AAB05078.1 | HrpY | Virulence | Hrp PAI | Protein | 1e-88 | 54 |
| hrcU | AAT96149.1 | HrcU | Virulence | T-PAI | Protein | 4e-91 | 54 |
| hrcU | NP_791219.1 | type III secretion protein HrcU | Virulence | Hrp PAI | Protein | 6e-85 | 53 |
| hrcU | AAG33887.1 | HrcU | Virulence | Hrp PAI | Protein | 3e-71 | 52 |
| hrcU | AAC35808.1 | hrp type III pathway protein | Virulence | Hrp PAI | Protein | 5e-75 | 51 |
