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Name : hrcV (Dda3937_00609) Accession : YP_003883240.1 Strain : Dickeya dadantii 3937 Genome accession: NC_014500 Putative virulence/resistance : Virulence Product : type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4789 EC number : - Position : 2652324 - 2654426 bp Length : 2103 bp Strand : + Note : E. coli containing D. dadantii hrp cluster is capable of secreting an exogenous effector into tobacco, eliciting a hypersensitive response DNA sequence : ATGGCTGTGCTGATCGCCTGGCTTAACCGTTTTGCCATGAGCGCCATGCAGCGCTCCGAAGTGGTGGGCGCCGTCATCGT CATGGCGATTGTGTTCATGATGATTATCCCGCTGCCGACCGGCCTGATTGACGTGCTGATTGCGTTCAACATCTGTATTT CATCACTGCTGATCGTGCTGGCGATGTACCTGCCCAAACCGCTGGCGTTCTCTACCTTCCCGGCGGTGCTGCTGCTGACC ACCATGTTCCGGCTGGCGCTGTCCATCTCCACCACCCGGCAGATTCTGTTGCAACAGGATGCCGGTCACGTGGTGGAGGC GTTCGGCAACTTCGTGGTGGGCGGCAATCTGGCGGTCGGCCTGGTGATCTTCATGATCCTGACGGTGGTGAACTTTCTGG TGATCACCAAAGGGTCGGAGCGGGTGGCGGAAGTGGCGGCGCGTTTCACCCTCGATGCCATGCCCGGCAAACAGATGTCC ATCGACAGCGACCTGCGCGCCGGGTTGATCGACGCCCAACAGGCTCGCCAGCGACGGGAAAACCTGGCCAAGGAGAGCCA ACTGTTCGGTGCCATGGACGGGGCGATGAAGTTCGTCAAAGGGGATGCCATCGCCAGCCTGGTGATCGTATTCATCAACA TGATTGGCGGCTTCGCCATCGGCGTGTTGCAAAACGGCATGGCCGCCGGCGACGCCATGCACATTTACTCGGTGCTGACC ATCGGCGACGGCCTGATCGCTCAGATTCCGGCGCTGCTGATTTCGCTGACCGCCGGGATGATCATCACCCGCGTCTCCGC CGACGGCCAGAAAATGGACAACAATATTGGCCGGGAGATCGCCGAGCAGCTGACCAGCCAGCCCAAGGCGTGGATCATCT CGTCGGTGGGCATGTTGGGGTTCGCGCTGCTGCCCGGTATGCCGACGCTGGTGTTTCTGCTAATCAGCCTGGTGTCGCTC GGCAGCGGGTTGTTTCAGCTGTGGCGCGTCAAACAGAGCGGCTTGCAGGATTCGCTGCTGGCGGATGACGGCATGCCCGC TGAACAGAACGGCTATCAGGATCTGCGGCGTTTCAACCCGACCCGCGCCTACCTGCTGCAGTTCCATACCGTGTGGCAGG GCGCCGCGGCGGCCGCGGTGCTGGTACAGGACATCCGTCGCCTGCGCAACCGGCTGGTGTACCACTTCGGCTTTACGCTG CCGTCGTTCGATATCGAATTCAACCCCAGCGTGCCGGAGGATGAGTTCCGCTTCTGCGTGTATGAAATCCCGCAGTTGCG AGCCAGCTTCGGCGTGCCGCTGCTGGCGGTGCCGCGCGGACAACTGCCGGAAGCGATGCAGGACGACGCCATGATGCCCG GCCTGTCGGCCCGCGACGAACACCACCTGCTGTGGCTGACGCCGGAACATCCGCTATTACAGCAGCCGGAACTGAGCCCC TGGAGCCCGGACGCGCTGATCCTCAGTCGCATGGAGAATGCGATTCATCGCAGCGGCGCGCAGTTTATCGGCCTGCAGGA AACCAAATCGATCCTCGCCTGGCTGGAGGCCGAACAGCCGGAGCTGGCGCAGGAGCTACAGCGCATCATGCCGTTATCGC GCTTCGCCAGCGTACTGCAACGGCTGGCGTCGGAGCGGGTGCCGCTGCGTTCGGTGCGGCCGATCGCCGAAGCGCTGATC GAAATCGGTCAGCATGAGCGCGACATCAACGCCCTCACCGACTACGTGCGGCTGGAGCTGAAAGCCCAAATTTGCCACCA GTACAGTCAGGACGACAGCCTCACCGTCTGGCTGCTGACGCCGGAAACCGAAGAGCTGCTGCGCGACGCGCTGCGCCAGA CGCAGAACGAAACCTTCTTCGCGCTGACCCAGGAATACGCCGCCACCCTGCTCGGCCTATTGCGGCGCGCATTCCCGCCG ATGACGCCGCCGTCGGCGCTGATTCTGGTGGCGCAGGACCTGCGCAGCCCGCTGCGCATTCTGTTGCAGGACGAATTTCA TCACGTACCGGTGCTGTCGTTCACCGAACTGGAGTCGCACCTGTCGATCAACGTGGCGGGCCGTATCGACCTGCTGGACC GGGTTGACCCCTTTAACGCATAG Protein sequence : MAVLIAWLNRFAMSAMQRSEVVGAVIVMAIVFMMIIPLPTGLIDVLIAFNICISSLLIVLAMYLPKPLAFSTFPAVLLLT TMFRLALSISTTRQILLQQDAGHVVEAFGNFVVGGNLAVGLVIFMILTVVNFLVITKGSERVAEVAARFTLDAMPGKQMS IDSDLRAGLIDAQQARQRRENLAKESQLFGAMDGAMKFVKGDAIASLVIVFINMIGGFAIGVLQNGMAAGDAMHIYSVLT IGDGLIAQIPALLISLTAGMIITRVSADGQKMDNNIGREIAEQLTSQPKAWIISSVGMLGFALLPGMPTLVFLLISLVSL GSGLFQLWRVKQSGLQDSLLADDGMPAEQNGYQDLRRFNPTRAYLLQFHTVWQGAAAAAVLVQDIRRLRNRLVYHFGFTL PSFDIEFNPSVPEDEFRFCVYEIPQLRASFGVPLLAVPRGQLPEAMQDDAMMPGLSARDEHHLLWLTPEHPLLQQPELSP WSPDALILSRMENAIHRSGAQFIGLQETKSILAWLEAEQPELAQELQRIMPLSRFASVLQRLASERVPLRSVRPIAEALI EIGQHERDINALTDYVRLELKAQICHQYSQDDSLTVWLLTPETEELLRDALRQTQNETFFALTQEYAATLLGLLRRAFPP MTPPSALILVAQDLRSPLRILLQDEFHHVPVLSFTELESHLSINVAGRIDLLDRVDPFNA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcV | AAB05999.2 | HrcV | Virulence | Hrp PAI | Protein | 0.0 | 78 |
| hrcV | AAT96337.1 | HrcV | Virulence | S-PAI | Protein | 0.0 | 69 |
| hrcV | AAT96256.1 | HrcV | Virulence | S-PAI | Protein | 0.0 | 69 |
| hrcV | AAT96297.1 | HrcV | Virulence | S-PAI | Protein | 0.0 | 69 |
| hrcV | ABA47273.1 | HrcV | Virulence | S-PAI | Protein | 0.0 | 69 |
| hrcV | ABQ88352.1 | HrcV | Virulence | Hrp PAI | Protein | 0.0 | 65 |
| hrpI | AAA03015.1 | HrpI | Virulence | Hrp PAI | Protein | 0.0 | 65 |
| hrcV | NP_791229.1 | type III secretion protein HrcV | Virulence | Hrp PAI | Protein | 0.0 | 64 |
| hrcV | AAG33877.1 | HrcV | Virulence | Hrp PAI | Protein | 0.0 | 64 |
| hrcV | AAT96139.1 | HrcV | Virulence | T-PAI | Protein | 0.0 | 64 |
| hrcV | AAT96193.1 | HrcV | Virulence | T-PAI | Protein | 0.0 | 64 |
| hrcV | AAR25631.1 | type III secretion protein HrcV | Not tested | Not named | Protein | 2e-179 | 63 |
| lssD | AAO18050.1 | LssD | Virulence | TTSS locus | Protein | 2e-114 | 42 |
| invA | AAS66860.1 | InvA | Not tested | SSR-2 | Protein | 1e-95 | 41 |
| YPO0266 | YP_002345347.1 | secretion system apparatus protein SsaV | Virulence | Not named | Protein | 3e-95 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| hrcV | YP_003883240.1 | type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) | VFG0064 | Protein | 4e-116 | 43 |
| hrcV | YP_003883240.1 | type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) | VFG0384 | Protein | 1e-113 | 42 |
| hrcV | YP_003883240.1 | type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) | VFG0198 | Protein | 3e-104 | 42 |
