Gene Information

Name : hrpL (Dda3937_00607)
Accession : YP_003883238.1
Strain : Dickeya dadantii 3937
Genome accession: NC_014500
Putative virulence/resistance : Unknown
Product : RNA polymerase sigma-54 factor rpoN
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 2650274 - 2650828 bp
Length : 555 bp
Strand : -
Note : E. coli containing D. dadantii hrp cluster is capable of secreting an exogenous effector into tobacco, eliciting a hypersensitive response

DNA sequence : 
ATGGAAACGATTACACTGAAACAAATGGATGCGTGTCAGATTCATACCCCTGCCAATACCGTGGACTGGGAGCAGGTTTT
TCGCCTGCATGGCAAGCGACTGCAAAACTTCATTCGCAAGCGCGTATCGAACCGTGAAGATGTGGAAGATTTACAGCAGA
TGACTTATCTGGAAGTGCTGAAGAACCGCGAAAAGTTCGCCGGCGCCTCGCGCCCGGAGACTTGGGTATTTGGCATTGCC
CTGAATCTGGTGCGAAATCACTTCAAACAGGCGCGCTATCGCGCCGTCGATATCAGCGACGATGCGTTGGAAGTGGCGGA
AATTCTGTCGACGGATATCGATCCCAGCCGCATTACGGAGTGCGATCACTCGCTGAACCGCGCGCTGGCGGCCAGTGCGC
ACCTGCCGGAGGAAACGCGTAAGATGTTGATGATGCTGCTGGATGCCGATGTCAGCTATCAGGATATCGCCGAGCAGCTC
AACATTCCTATTGGCACTGTACGCTCGCGTCTTTCCCGCGCCAGGGGATATCTCCGCCAGGCTGTTGATGCATAA

Protein sequence : 
METITLKQMDACQIHTPANTVDWEQVFRLHGKRLQNFIRKRVSNREDVEDLQQMTYLEVLKNREKFAGASRPETWVFGIA
LNLVRNHFKQARYRAVDISDDALEVAEILSTDIDPSRITECDHSLNRALAASAHLPEETRKMLMMLLDADVSYQDIAEQL
NIPIGTVRSRLSRARGYLRQAVDA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrpL AAD24681.1 sigma factor HrpL Virulence Hrp PAI Protein 9e-46 58
hrpL ABA47271.1 HrpL Virulence S-PAI Protein 2e-31 50
hrpL AAT96335.1 HrpL Virulence S-PAI Protein 4e-31 50
hrpL NP_791231.1 RNA polymerase sigma factor HrpL Virulence Hrp PAI Protein 2e-24 46
hrpL AAG33875.2 HrpL Virulence Hrp PAI Protein 1e-23 46
hrpL ABQ88350.1 HrpL Virulence Hrp PAI Protein 1e-23 44
hrpL AAA17652.1 putative alternate sigma factor Virulence Hrp PAI Protein 1e-23 44
hrpL AAT96191.1 HrpL Virulence T-PAI Protein 7e-24 44
hrpL AAT96137.1 HrpL Virulence T-PAI Protein 7e-24 44