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Name : hrpS (Dda3937_03345) Accession : YP_003883235.1 Strain : Dickeya dadantii 3937 Genome accession: NC_014500 Putative virulence/resistance : Virulence Product : HrpS type III protein secretion system regulatory protein Function : - COG functional category : K : Transcription COG ID : COG3829 EC number : - Position : 2646451 - 2647434 bp Length : 984 bp Strand : - Note : HrpS possesses a sigma 54 interaction domain; belongs to the Fis family; E. coli containing D. dadantii hrp cluster is capable of secreting an exogenous effector into tobacco, eliciting a hypersensitive response DNA sequence : ATGACGATAAGGAATAGCAATGAATCCGTGCAGTCACTTCATTGTGCCTCCCATGAGTCCTCGTTAACGCATCCGTCGGA AGATATACACGGATCGCTATCTTCTCTCATCCACACTATCGCGCCCCTCAACGTTGATATCGTACTGGAAGGCGAAACCG GCACCGGCAAAGACACGCTGGCGCGCCGTATTCATCAGCTTTCCGGCTGCGCCGGCCCGTTGGTGGCGGTGAACTGCGCC GCCGTGCCGGAAACGCTGGCGGAAAGCGAGTTATTCGGGGTGGTGTCCGGCGCTTACACCGGCGCCAGCCGGTCCCGCGC CGGATACCTTGAAACCGCGGACAAAGGCATTCTGTTTCTGGATGAGATCGACAGTATGCCGCTGACGCTGCAGGCCAAAA TGTTACGGGTTCTGGAAAGTCGCGGCATCGAACGGCTGGGCAGCACCCAATTCAAACCGGTGGATATGCGGGTGATTGTC GCCACGCAGACGCCATTGCAGAAACTGGTGGACGAAGGGCGTTTTCGGCGTGACCTCTACTTCCGGCTGGATACGGTAAA AATTCAGCTGCCGACGCTGCGTTCGCGTACGGAAATCATTCTGCCGTTATTCGAGCGCTTTTTGCTCGAGGCCTCGGCCC GCCTGAAACGGCCGGCGCCGGGCCTGTCGGCCATCATTCAGGAACAACTGCTGATGCACGGCTGGCCCGGCAACATTCGT GAGTTGAAGGCGGCGGCCGAGCGCTGGGTGCTGGGGCTGTCGCCGGTGCCGATAGCCAGTGATGGCGACGTGCAGGTAAT GGGAGAGGATACGCCGCTGACGTCGCTGAAAGTGCGCCTGCGCCGCATTGAGCGGTTTCTGATTCAGGAAGCGTTGCAGC GCAACGACCACTGTATCGATACGGTGGTGAATGAACTGGGCATTCCCAAACGCACGCTCTATCACCGCATCAAGCTGCTG AATGTGGCGGCGCGCGGGCTGTAA Protein sequence : MTIRNSNESVQSLHCASHESSLTHPSEDIHGSLSSLIHTIAPLNVDIVLEGETGTGKDTLARRIHQLSGCAGPLVAVNCA AVPETLAESELFGVVSGAYTGASRSRAGYLETADKGILFLDEIDSMPLTLQAKMLRVLESRGIERLGSTQFKPVDMRVIV ATQTPLQKLVDEGRFRRDLYFRLDTVKIQLPTLRSRTEIILPLFERFLLEASARLKRPAPGLSAIIQEQLLMHGWPGNIR ELKAAAERWVLGLSPVPIASDGDVQVMGEDTPLTSLKVRLRRIERFLIQEALQRNDHCIDTVVNELGIPKRTLYHRIKLL NVAARGL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrpRS | ABA47311.1 | HrpRS | Virulence | S-PAI | Protein | 2e-91 | 63 |
| unnamed | AAT96283.1 | HrpS/HrpR-like protein | Not tested | S-PAI | Protein | 3e-91 | 62 |
| unnamed | AAT96324.1 | HrpS/HrpR-like protein | Virulence | S-PAI | Protein | 3e-91 | 62 |
| unnamed | AAT96363.1 | HrpS/HrpR-like protein | Virulence | S-PAI | Protein | 1e-90 | 61 |
| hrpS | AAD24684.1 | sigma-54-dependent enhancer-binding protein HrpS | Virulence | Hrp PAI | Protein | 6e-90 | 61 |
| hrpR | AAC34752.1 | HrpR | Virulence | Hrp PAI | Protein | 3e-79 | 58 |
| hrpR | NP_791206.1 | type III transcriptional regulator HrpR | Virulence | Hrp PAI | Protein | 2e-79 | 58 |
| hrpS | AAT96161.1 | HrpS | Virulence | T-PAI | Protein | 5e-76 | 56 |
| hrpS | AAT96215.1 | HrpS | Virulence | T-PAI | Protein | 5e-76 | 56 |
| hrpR | AAC35799.1 | transcriptional regulator | Virulence | Hrp PAI | Protein | 4e-77 | 56 |
| hrpR | AAT96162.1 | HrpR | Virulence | T-PAI | Protein | 2e-76 | 56 |
| hrpR | AAT96216.1 | HrpR | Virulence | T-PAI | Protein | 2e-76 | 56 |
| hrpS | ABQ88367.1 | HrpS | Virulence | Hrp PAI | Protein | 2e-75 | 55 |
| hrpS | AAA17650.1 | positive regulatory factor | Not tested | Hrp PAI | Protein | 2e-75 | 55 |
| hrpR | AAA17651.1 | positive regulatory factor | Not tested | Hrp PAI | Protein | 1e-75 | 55 |
| hrpR | ABQ88368.1 | HrpR | Virulence | Hrp PAI | Protein | 1e-75 | 55 |
| hrpS | NP_791207.1 | type III transcriptional regulator HrpS | Virulence | Hrp PAI | Protein | 1e-76 | 54 |
| hrpS | AAC35800.1 | transcriptional regulator | Virulence | Hrp PAI | Protein | 2e-77 | 54 |
| hrpS | AAC34753.1 | HrpS | Virulence | Hrp PAI | Protein | 5e-74 | 53 |
