Gene Information

Name : intA (Dda3937_02190)
Accession : YP_003882692.1
Strain : Dickeya dadantii 3937
Genome accession: NC_014500
Putative virulence/resistance : Unknown
Product : phage integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 2046545 - 2047795 bp
Length : 1251 bp
Strand : -
Note : -

DNA sequence : 
ATGGCTCGTATAACTACCCCTCTGACCAATACCGAGATCAAAGCCGCCAAACCTGCCGAGAAGGAATACACACTACAGGA
CGGGGATGGGTTGTATCTGTTGGTGAAACCGAGTGGCTCTAAGATCTGGCGCTTTAACTATTACCGCCCCGATACAAAGA
AACGTGCGTTAATCAGCTTTGGCGCATTCCCTGCGGTTTCCTTGGCTGAAGCCAGGCAACGGCGTGAATCGGCAAAAGCA
CTGATAAGCAAAGGCATCGATCCACAATTCCACCAGCAACAGCAGCGAGAACAAGAACAGGCAATCAGCCTGAACACGTT
CGCCAAAGTCGCCGCCGACTGGTATGAAGTGAAAAAATCGCAACAGTTGGCCGCTAACACCATTAAAGATATCTGGCGCT
CTCTGGAAAAATACGTGTTCCCGTTCATCGCAAACCAGCCTATCAGCCAGCTTACCGCCCGCCACTTCATCACCGCGCTG
GAACCGATACAGGCCAGCGGCAAACTGGAAACCGTTAAACGGGTCAGTCAGCGCATTAACGAAGTGATGGACTATGCCGT
TAACTCCGGCCTGATACCGGCTAACCCGGCAGCGAAGATCCGCAAAGCGTTTCAGACGCCAGTGAAAACCCATATGCCGA
CCATCCGGCCAGAGGCATTACCTGGCCTGATGAAAACGCTATCGGTCGCCAGCATCGAGCTACAAACCCGGTTATTGATT
GAATGGCAATTGCTGACCGTTTCCCGCCCGGCTGAAGCCGCAGAAACCCGCTGGAGCGAGATAGATCTTATGCAGAACAC
CTGGACAATCCCGGCTGGCCGCATGAAGATGCGCCGCGAGCACGTTATTCCCCTGCCCCCACAAGCGTTAGCCATTCTGG
ACGCCATGAAGCCCATCAGCGGCCACCGGGAATATCTGTTCCCTTCCGCTAAAGACCCGAAACAGCCAATGAACAGCCAA
ACCGCTAACGCCGCATTGCGTCGCATGGGTTACAAAGGCGTGCTGGTGTCCCACGGTTTGCGCGCTATCTTCAGTACCGC
CGCCAACGAAGCAGGCTTCCCGCCGGACGTCATCGAAGCCGCGCTAGCTCACGTTGACACCAATGAAGTGCGCCGCGCTT
ACAACCGCTCCACCTATCTGGAGCAACGCAAGGTACTGATGTGCTGGTGGGGTGAGTTTGTTGAAACCGCCGCCACTGGG
AAGGCGATGGCATCCGAAGGGGCTCGGGTTTTGCGGGTAGTCGGAGAATAG

Protein sequence : 
MARITTPLTNTEIKAAKPAEKEYTLQDGDGLYLLVKPSGSKIWRFNYYRPDTKKRALISFGAFPAVSLAEARQRRESAKA
LISKGIDPQFHQQQQREQEQAISLNTFAKVAADWYEVKKSQQLAANTIKDIWRSLEKYVFPFIANQPISQLTARHFITAL
EPIQASGKLETVKRVSQRINEVMDYAVNSGLIPANPAAKIRKAFQTPVKTHMPTIRPEALPGLMKTLSVASIELQTRLLI
EWQLLTVSRPAEAAETRWSEIDLMQNTWTIPAGRMKMRREHVIPLPPQALAILDAMKPISGHREYLFPSAKDPKQPMNSQ
TANAALRRMGYKGVLVSHGLRAIFSTAANEAGFPPDVIEAALAHVDTNEVRRAYNRSTYLEQRKVLMCWWGEFVETAATG
KAMASEGARVLRVVGE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0847 NP_230494.1 phage family integrase Not tested VPI-1 Protein 1e-108 55
VC0395_A0372 YP_001216328.1 phage family integrase Not tested VPI-1 Protein 1e-108 55
int AAK20773.1 integrase Not tested VPI Protein 1e-108 55
int AAK20803.1 integrase Not tested VPI Protein 1e-108 55
unnamed AAA82714.1 integrase Not tested VPI Protein 1e-108 55
VC0516 NP_230167.1 phage integrase Not tested VSP-2 Protein 2e-102 54
VPI2_0001 ACA01818.1 phage family integrase Not tested VPI-2 Protein 2e-96 50
VC1758 NP_231394.1 phage family integrase Not tested VPI-2 Protein 4e-96 50
VC0395_A1357 YP_001217300.1 phage family integrase Not tested VPI-2 Protein 4e-96 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
intA YP_003882692.1 phage integrase VFG1092 Protein 2e-96 50