Gene Information

Name : Dda3937_00051 (Dda3937_00051)
Accession : YP_003882542.1
Strain : Dickeya dadantii 3937
Genome accession: NC_014500
Putative virulence/resistance : Unknown
Product : ISEch10 OrfB
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 1903913 - 1904722 bp
Length : 810 bp
Strand : -
Note : IS3/IS51 family

DNA sequence :
ATGACGATGTGTCGGGTACTGAATGTTGCCAGGGCTGGTTTCTATGCGTGGCTGCATAATCCGGTCTCAGCGCGTGATAA
AGATAACCAGCGCCTGCTGATACTCATCCGGGACTCCTATTCACTGAGCGGTGGCGTATACGGTTACCGTCGGGTTCATG
GCGATCTGAACGAAATCGGGGAAACCTGCGGTAAGAACCGGGTCAGCCGTATCATGCAGCAGAACCGGCTCAAAGCCGTT
CGCGGCTATAAAGCCCCGCGTCGGATCGCAGGCAGACCTTCTGTGGTCGCGCCTAACCGGGTGCAGCGGGAATTTACCGT
CGTGCAGCCCAATCAGGTTTGGGTAACCGATATCACCTACATCCGCACCTGGCAGGGCTGGCTGTATCTGGCGGTCGTCA
TCGACCTCTTCGCTCGTAACGTGGTGGGCTGGTCGATGAAACCCACGCTGTCACGAGAGCTGGCGCTGGATGCACTGATG
ATGGCCGTGTGGCGACGTAAACCGCAAAGCGAGGTTATCGTGCACAGCGATCAGGGCAGTCAGTACGGCAGCGACGACTG
GCAGCGCTTCTGCCGGGCCAATAACCTGGCCCCGAGCATGAGCCGGCGTGGCAACTGCTGGGATAATGCGGTGGCCGAAT
CGTTCTTCAGTTCACTGAAAAAAGAACGCATCAGAAAGCGGATCTACAAAACGCGCGATCTGGCCCGCGCGGATATCTTC
GATTACATTGAAGTCTTCTACAACCGGGCCCGGCGGCACAGTCACCTGGGCGGCGTCAGTCCGGAGGCTTTCGAACAGGC
CTCGTCGTGA

Protein sequence :
MTMCRVLNVARAGFYAWLHNPVSARDKDNQRLLILIRDSYSLSGGVYGYRRVHGDLNEIGETCGKNRVSRIMQQNRLKAV
RGYKAPRRIAGRPSVVAPNRVQREFTVVQPNQVWVTDITYIRTWQGWLYLAVVIDLFARNVVGWSMKPTLSRELALDALM
MAVWRRKPQSEVIVHSDQGSQYGSDDWQRFCRANNLAPSMSRRGNCWDNAVAESFFSSLKKERIRKRIYKTRDLARADIF
DYIEVFYNRARRHSHLGGVSPEAFEQASS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
trp1329B CAB46576.1 IS1329 transposase B Not tested HPI Protein 2e-40 46
tnpB CAB61574.1 transposase B Not tested HPI Protein 2e-40 46
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 3e-42 45
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 3e-42 44
insF CAC43414.1 transposase of insertion element IS3 Not tested PAI III 536 Protein 3e-43 44
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 1e-41 44
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 3e-45 43
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 3e-45 43
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 3e-45 43
unnamed CAI43898.1 putative transposase Not tested LEE Protein 6e-31 42
aec65 AAW51748.1 Aec65 Not tested AGI-3 Protein 6e-31 42
unnamed AAC31485.1 L0006 Not tested LEE Protein 1e-30 42
ECs4537 NP_312564.1 hypothetical protein Not tested LEE Protein 2e-30 42
unnamed AAF09030.1 unknown Not tested SHI-O Protein 2e-47 41
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 2e-47 41
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 1e-47 41
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 2e-47 41
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 1e-47 41
unnamed AAF09022.1 unknown Not tested SHI-O Protein 7e-47 41
ECO111_3779 YP_003236114.1 putative IS602 transposase OrfB Not tested LEE Protein 7e-31 41
unnamed ACU09432.1 IS911 transposase orfB Not tested LEE Protein 6e-31 41
Z5089 NP_290241.1 transposase Not tested LEE Protein 8e-31 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dda3937_00051 YP_003882542.1 ISEch10 OrfB VFG1631 Protein 2e-43 44
Dda3937_00051 YP_003882542.1 ISEch10 OrfB VFG0785 Protein 4e-31 41