Gene Information

Name : yfeB (Dda3937_00375)
Accession : YP_003882481.1
Strain : Dickeya dadantii 3937
Genome accession: NC_014500
Putative virulence/resistance : Virulence
Product : manganese ABC transporter ATP-binding protein SitB
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 1845804 - 1846700 bp
Length : 897 bp
Strand : -
Note : -

DNA sequence : 
ATGACCCGGCACGCAGAAGACGCACAGTTGACCGTGCAGGACATCACGGTCACCTACAACAACGGCCACACCGCCATCCA
TAACGCCAGTTTTCATCTCCACGGCGGCACTATTTGCGCGCTGGTGGGGGTCAACGGTAGCGGAAAGTCAACGCTGTTCA
AAAGCATTATGGGCATCGTCCGCCCCACCACCGGCAGCGTGTCGCTCAACGACCTGCCCGTCAGGCAGGCGCTGAAAAGC
AATCTCATTGCCTATGTGCCCCAGACCGAGGAAGTAGACTGGAACTTTCCGGTGCTGGTTGAGGATGTGGTGATGATGGG
GCGCTACGGCAAAATGTCGCTGTTTCGCATTCCGTCAGCGGAAGACAAAAAGCAGGTGGCGCTGGCGCTGGAGCGCGTTG
GCATGGCGGATCTGCATCAACGCCAGATCGGCGAGCTGTCCGGCGGGCAAAAGAAGCGGGTGTTTCTGGCGCGCGCGCTG
GCGCAGCAGGCGCAAATCATCCTGCTGGACGAGCCGTTCACCGGTGTCGATGTACAGACGGAAAACGCGATTATCAAGCT
GCTGAAAACGCTGCGCGAAGAGGGCCACCTGATTTTGGTCTCCACCCATAACCTCGGCAGCGTGCCTGAGTTTTGCGATC
AGGTGGTGCTGATCAACCGCACCGTGCTGGCGGTCGGCCCGACGGAGAGCACCTTCACCCACCCGAATCTGGAAAAAACC
TTCGGCGGCGTGCTGCGTTATCTGCGCCTGTCGGGGCAACAACTGCATCAGGACGCCGATGCCCGCGAGTTGACGGTACT
GACGGACGACGAGCGCCCGGCGGTCTTTTACGGCAAGGGCAGCCTGACGCCGCCCCATCGCTCATCCGCGGATGAGGAGG
ATAAGCGCCATGATTGA

Protein sequence : 
MTRHAEDAQLTVQDITVTYNNGHTAIHNASFHLHGGTICALVGVNGSGKSTLFKSIMGIVRPTTGSVSLNDLPVRQALKS
NLIAYVPQTEEVDWNFPVLVEDVVMMGRYGKMSLFRIPSAEDKKQVALALERVGMADLHQRQIGELSGGQKKRVFLARAL
AQQAQIILLDEPFTGVDVQTENAIIKLLKTLREEGHLILVSTHNLGSVPEFCDQVVLINRTVLAVGPTESTFTHPNLEKT
FGGVLRYLRLSGQQLHQDADARELTVLTDDERPAVFYGKGSLTPPHRSSADEEDKRHD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 2e-71 63
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-71 63
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 1e-71 63
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 1e-71 63
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 2e-71 63
ef0093 AAM75296.1 EF0093 Not tested Not named Protein 3e-33 41
EF0575 NP_814340.1 cationic ABC transporter ATP-binding protein Not tested Not named Protein 4e-33 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfeB YP_003882481.1 manganese ABC transporter ATP-binding protein SitB BAC0440 Protein 4e-96 72
yfeB YP_003882481.1 manganese ABC transporter ATP-binding protein SitB BAC0350 Protein 6e-72 63
yfeB YP_003882481.1 manganese ABC transporter ATP-binding protein SitB BAC0400 Protein 8e-38 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfeB YP_003882481.1 manganese ABC transporter ATP-binding protein SitB VFG0526 Protein 6e-72 63