Gene Information

Name : yfeC (Dda3937_00374)
Accession : YP_003882480.1
Strain : Dickeya dadantii 3937
Genome accession: NC_014500
Putative virulence/resistance : Virulence
Product : manganese ABC transporter inner membrane permease SitC
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 1844957 - 1845811 bp
Length : 855 bp
Strand : -
Note : -

DNA sequence : 
ATGATTGATGCGTTGCTGGCGCCCTTCCAGTATGAATACATGGTCAAAGCCATCCTGATAAGCGCCGTGGTCGGCGGCAC
CTGTGCCTTTTTGTCCGCCTACCTGATGCTGAAAGGCTGGTCGCTGATGGGCGACGCGCTGTCGCATTCGGTGGTGCCGG
GCGTGGCCGGGGCTTATGCGCTGGGGCTGCCTTACGCCGCCGGCGCGTTTTTCGCCGGCATTCTGGCGGCGCTCGCCATG
ACCTTCATCCGGCATCTGACCCGCATCCGCGAAGACGCGGTGATCGGGTTTATCTTCTCCACCTTTTTTGCCGCCGGGCT
GCTGATCATCTCGCTAAACCCGACCGCGGTGAACGTGCAGTCGATTATTTTCGGCAATATTCTCGGCATTGCGGATGAAG
ACATCCTGCAGGTGGCGCTGATTATCGGCATTTCACTCATCGTGTTGTGCTTTATCTGGAAAGATCTGTTCGTCACCTTT
TTTGACGAAATCCACGCCAGAACCATCGGCCTGTCGCCGCTGCGGCTGAAAATCATCTTCTTCACCCTGCTGAGCGCCTG
CACCGTCGCCGCGCTGCAAACGGTAGGCGCCATTTTGGTGATCGCTATGGTGATTACGCCGGGCGCCACCGCCTGGCTGC
TGACCGACCGCTTCCCGCGTCTGGTGCTGATCGCCATTGCGCTCGGCACTGTTACCAGCGCGGTGGGCGCCTGGCTGAGT
TTCTTCCTGAACGGCGCCACCGGCGGCATCATCGTTTCACTGCAAACGCTGATGTTCCTGCTGGCCTTTGTTTTCGCGCC
CCGCCACGGGTTGCTGGCCGCCCGTCGTCAACGCCGTCTGGCGATGAGGAAATAA

Protein sequence : 
MIDALLAPFQYEYMVKAILISAVVGGTCAFLSAYLMLKGWSLMGDALSHSVVPGVAGAYALGLPYAAGAFFAGILAALAM
TFIRHLTRIREDAVIGFIFSTFFAAGLLIISLNPTAVNVQSIIFGNILGIADEDILQVALIIGISLIVLCFIWKDLFVTF
FDEIHARTIGLSPLRLKIIFFTLLSACTVAALQTVGAILVIAMVITPGATAWLLTDRFPRLVLIAIALGTVTSAVGAWLS
FFLNGATGGIIVSLQTLMFLLAFVFAPRHGLLAARRQRRLAMRK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC NP_461784.1 permease Virulence SPI-1 Protein 1e-68 66
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-68 66
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-68 66
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 8e-69 66
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-68 66
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 2e-38 42
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 4e-38 42
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 4e-38 42
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 4e-38 42
sitD NP_461785.1 permease Virulence SPI-1 Protein 2e-38 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfeC YP_003882480.1 manganese ABC transporter inner membrane permease SitC BAC0441 Protein 4e-80 80
yfeC YP_003882480.1 manganese ABC transporter inner membrane permease SitC BAC0351 Protein 5e-69 66
yfeC YP_003882480.1 manganese ABC transporter inner membrane permease SitC BAC0442 Protein 5e-33 43
yfeC YP_003882480.1 manganese ABC transporter inner membrane permease SitC BAC0352 Protein 1e-38 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfeC YP_003882480.1 manganese ABC transporter inner membrane permease SitC VFG0527 Protein 5e-69 66
yfeC YP_003882480.1 manganese ABC transporter inner membrane permease SitC VFG0528 Protein 1e-38 42