Gene Information

Name : yfeD (Dda3937_00373)
Accession : YP_003882479.1
Strain : Dickeya dadantii 3937
Genome accession: NC_014500
Putative virulence/resistance : Virulence
Product : manganese ABC transporter inner membrane permease SitD
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 1844128 - 1844955 bp
Length : 828 bp
Strand : -
Note : -

DNA sequence : 
ATGGAATGGTTGACCTTGTTAGCCGAGCCCTTTGCCTTTCCGTTCATGGTCAAAGCCATGCTGGCGGCAGGCGTGGTCGG
CATGGTGTGCGCGGTGCTGTCCTGTTTTATGGTGCTCAAAGGCTGGTCGCTGATGGGCGACGCCGTTTCCCACGCCGTGC
TGCCCGGCGTGGTGCTGGCCTGGCTGGCGGGCATCCCGCTGGCGATCGGCGCGTTCGCCTCCGGTCTGTTCTGCGCGCTG
GCTACCGGCTACGTGAAGGAACGCTGCCGCATCAAAGAAGATACCGTGATGGGGATTCTGTTTTCCGGCATGTTCGCCGT
CGGTCTGGTGCTGTTTTCTCGCGTCAATACCGAACAGCACCTGAGCCATATCCTGTTCGGCAACGTACTGGGGATCACCC
GCTACGAGCTGCAACAAACGCTGGTAATCAGCCTGCTGGTACTGGCCGTGGTTATCATCAAATGGCGCGATCTGGTGTTG
TACTGTTTTGACCCCACGCAGGCGCAAATCTGCGGTCTGCCGGTAAAACTGCTGCACTATGGTCTGTTGACGCTGCTGTC
GCTGACCATCGTCGCCGCGTTGCAGGCGGTCGGCGTGATTTTGGTGATCGCCATGTTGATTACCCCCGGCATTACCGGAT
TTGTGCTGTGCAAACGCTTCGGCGCCATGATGCTGGTGGCGGTGACCAGCGCGACCTTCTCGTCGGTTTTCGGCACCTGG
CTCAGCTACTTCCTTGATGGCGCGACCGGGCCGTGCATCGTGATTATCCAGTCGCTGATTTTTATCATCGCGCAGTGCGC
CGCGAAAATGCGAAAACCGCAGCAGTGA

Protein sequence : 
MEWLTLLAEPFAFPFMVKAMLAAGVVGMVCAVLSCFMVLKGWSLMGDAVSHAVLPGVVLAWLAGIPLAIGAFASGLFCAL
ATGYVKERCRIKEDTVMGILFSGMFAVGLVLFSRVNTEQHLSHILFGNVLGITRYELQQTLVISLLVLAVVIIKWRDLVL
YCFDPTQAQICGLPVKLLHYGLLTLLSLTIVAALQAVGVILVIAMLITPGITGFVLCKRFGAMMLVAVTSATFSSVFGTW
LSYFLDGATGPCIVIIQSLIFIIAQCAAKMRKPQQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD NP_461785.1 permease Virulence SPI-1 Protein 4e-59 54
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 3e-59 54
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 5e-59 54
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 8e-59 53
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 8e-59 53
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 8e-46 44
sitC NP_461784.1 permease Virulence SPI-1 Protein 8e-46 44
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 6e-46 44
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 9e-46 44
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 9e-46 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfeD YP_003882479.1 manganese ABC transporter inner membrane permease SitD BAC0442 Protein 4e-72 68
yfeD YP_003882479.1 manganese ABC transporter inner membrane permease SitD BAC0352 Protein 2e-59 54
yfeD YP_003882479.1 manganese ABC transporter inner membrane permease SitD BAC0441 Protein 3e-42 46
yfeD YP_003882479.1 manganese ABC transporter inner membrane permease SitD BAC0351 Protein 4e-46 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfeD YP_003882479.1 manganese ABC transporter inner membrane permease SitD VFG0528 Protein 2e-59 54
yfeD YP_003882479.1 manganese ABC transporter inner membrane permease SitD VFG0527 Protein 3e-46 44