Gene Information

Name : cbrD (Dda3937_02845)
Accession : YP_003882397.1
Strain : Dickeya dadantii 3937
Genome accession: NC_014500
Putative virulence/resistance : Virulence
Product : ATP binding protein from the ferric achromobactin permease
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 1754948 - 1755757 bp
Length : 810 bp
Strand : +
Note : -

DNA sequence : 
ATGACCGCCATTACCAGCCGGGAACTGACCCTCGGCTATGCCAGCCAGACTATTATCGACAACCTGGATATCCAGTTGCC
GAAGGGCAAAGTGTCGGTGCTGATTGGCAGCAACGGCTGCGGCAAAAGTACGCTGCTCAAGTCTTTCGCCCGTTTGCTCA
AACCGCTGAAAGGCGCGGTGATCCTCAATGGCGAGGATATCCACCGCCAGTCCACCGCCGCCGTGGCGCGCGAACTGGCG
ATTTTGCCGCAGATGCCGGACGCGCCGGAAGGCATTACCGTGAAACAGCTGGTCAGCCTGGGCCGCTATCCTTACCAGAA
CTGGCTACAGCAGTGGTCGGAGCAAGACGAGGCGATGGTGAATCAGGCTCTGCGCCAGACCGGCACCGACATGCTGGCGG
AGCGACCGGTGGATGCGTTGTCCGGCGGCCAGCGCCAGCGGGTGTGGATCGCCATGACGCTGGCGCAGGACACCGAAGTG
GTACTGCTGGACGAACCCACCACCTTCCTCGATCTGGCGCATCAGATCGAGGTGCTGGATTTACTGCGTGAGTTGAACCG
CCAGCACGGCAAAACCATCATTATGGTGCTGCACGACCTCAATCTGGCCTGCCGTTACGCCGACCACATGGTGGCGGTGC
ATAACCGCACCGCTTTCGCGCAGGGCGCGCCGGCTGAGATTCTGGATGAGGCGCTGGTTAAAACGGTGTTCAATCTGGAC
TGTCGGATCGTCCCCGACCCGTTTTTCCACACGCCATTGTGTATTCCGTTCGGGCGCGAGAAACCACAGGAGAGGGCGAC
GGTGGCATAA

Protein sequence : 
MTAITSRELTLGYASQTIIDNLDIQLPKGKVSVLIGSNGCGKSTLLKSFARLLKPLKGAVILNGEDIHRQSTAAVARELA
ILPQMPDAPEGITVKQLVSLGRYPYQNWLQQWSEQDEAMVNQALRQTGTDMLAERPVDALSGGQRQRVWIAMTLAQDTEV
VLLDEPTTFLDLAHQIEVLDLLRELNRQHGKTIIMVLHDLNLACRYADHMVAVHNRTAFAQGAPAEILDEALVKTVFNLD
CRIVPDPFFHTPLCIPFGREKPQERATVA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 2e-60 49
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 2e-60 49
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 3e-55 48
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 6e-58 47
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 2e-55 46
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-55 46
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-55 46
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 2e-55 46
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 4e-51 44
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 3e-52 43
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 3e-52 43
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 3e-52 43
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 3e-52 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cbrD YP_003882397.1 ATP binding protein from the ferric achromobactin permease BAC0164 Protein 2e-55 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cbrD YP_003882397.1 ATP binding protein from the ferric achromobactin permease VFG0925 Protein 2e-63 50
cbrD YP_003882397.1 ATP binding protein from the ferric achromobactin permease VFG1042 Protein 2e-55 48