Gene Information

Name : phoB (Dda3937_01939)
Accession : YP_003881900.1
Strain : Dickeya dadantii 3937
Genome accession: NC_014500
Putative virulence/resistance : Virulence
Product : two component system DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1212381 - 1213070 bp
Length : 690 bp
Strand : +
Note : PhoB is phosphorylated by the sensor-histidine kinase in response to phosphate limitation

DNA sequence : 
ATGGCAAGACGTATTTTGGTGGTGGAAGATGAAGCGCCGATCCGCGAGATGGTGTGCTTCGTGCTGGAACAGAACGGCTA
TCAGCCGGTTGAGGCTGAGGATTATGACAGCGCCGTTACCCGGCTGGCCGAACCTTATCCTGAACTGGTGCTGCTGGACT
GGATGCTACCCGGCGGGTCCGGTTTGCAGTTTATCAAGCACATGAAACGCGAAGCGCTGACCCGTGATATTCCGGTCATG
ATGCTGACGGCGCGTGGTGAAGAAGAAGATCGCGTGCGCGGTCTGGAAGTGGGCGCCGACGATTACATCACCAAACCGTT
TTCGCCCAAAGAGCTGGTGGCGCGCATCAAAGCGGTAATGCGCCGGATTTCGCCGATGGCGGTTGAAGAAGTGATTGAAA
TGCGCGGGTTAAGCCTGGACCCCTCGTCCCATCGGGTGACCACGGAAGAACACGCGCTAGATATGGGGCCGACGGAGTTC
AAGCTACTGCACTTCTTTATGACCCATCCGGAACGGGTATATAGTCGTGAGCAGTTGCTGAATCATGTATGGGGCACTAA
CGTTTATGTTGAGGATCGGACTGTGGATGTCCATATCCGCCGCCTGCGCAAGGCGCTGGAAACCAGTGGACACGACAAGA
TGGTTCAGACCGTTCGGGGAACTGGATACCGTTTCTCAACACGTTACTGA

Protein sequence : 
MARRILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDSAVTRLAEPYPELVLLDWMLPGGSGLQFIKHMKREALTRDIPVM
MLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRISPMAVEEVIEMRGLSLDPSSHRVTTEEHALDMGPTEF
KLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALETSGHDKMVQTVRGTGYRFSTRY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 2e-34 41
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 2e-34 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
phoB YP_003881900.1 two component system DNA-binding response regulator HE999704.1.gene2815. Protein 4e-39 43
phoB YP_003881900.1 two component system DNA-binding response regulator NC_010400.5986590.p0 Protein 2e-36 41
phoB YP_003881900.1 two component system DNA-binding response regulator BAC0596 Protein 2e-34 41
phoB YP_003881900.1 two component system DNA-binding response regulator CP001138.1.gene2239. Protein 2e-34 41
phoB YP_003881900.1 two component system DNA-binding response regulator CP000647.1.gene2531. Protein 1e-35 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
phoB YP_003881900.1 two component system DNA-binding response regulator VFG1563 Protein 1e-34 41
phoB YP_003881900.1 two component system DNA-binding response regulator VFG1702 Protein 8e-35 41