Gene Information

Name : PPE_01418 (PPE_01418)
Accession : YP_003869796.1
Strain : Paenibacillus polymyxa E681
Genome accession: NC_014483
Putative virulence/resistance : Virulence
Product : sensory transduction protein
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1522309 - 1522998 bp
Length : 690 bp
Strand : +
Note : COGMatches:COG0745; PfamMatches:PF00072, PF00486; PrositeMatches:PS50110, PS00217; go_process: regulation of transcription, DNA-dependent (GO:0006355)

DNA sequence : 
ATGCGTTCTACTATTCTGATTATTGATGACGATGAAAAAATTGTTTCCATGCTGCGCAGAGGGCTGGCATTTGAAGGCTA
TGAAGTGCTGACAGCCGCCAATGGAGCAGAGGGATTAAATAAAATGCTGACAGCTGAGCCTGATGTGGTCGTGCTGGATG
TAATGATGCCGCAGGTCGATGGTTTTGAAGTATGCCGTCGCATGCGGGAGGGTGGAAGCACGGTACCTGTTCTGATGCTT
ACAGCCAAGGATGAGGTTGAGAATCGGGTTAAGGGCTTGGATCTAGGGGCCGATGATTATCTTGTCAAGCCGTTTGCTCT
AGAAGAGTTGCTGGCACGAGTTCGAGCGCTTTTGCGGCGTAAAACCGAACAACAGGACAATAACGGAAATCGGCTTACCT
TCGAGGATTTACAACTGGATAACGAATCCCGTGAAGTGGTTCGTGGCGGCAAACGCTTGGAACTGACAGCCAAAGAATTT
GAACTGCTCCATTTGTTCATGCAAAACCCCAAGCGTGTTCTGTCGCGCGATCTGATTATGGACAAAATTTGGGGCTATGA
CTATAGCGGAGAATCGAATGTGCTGGAAGTATATATTGCCATGCTACGACAAAAAACGGAGCAGGATGGCGGTAAACGAC
TCATTCGTACAATTCGGGGAGCTGGCTATATTTTAAGAGGTGATGTGTAA

Protein sequence : 
MRSTILIIDDDEKIVSMLRRGLAFEGYEVLTAANGAEGLNKMLTAEPDVVVLDVMMPQVDGFEVCRRMREGGSTVPVLML
TAKDEVENRVKGLDLGADDYLVKPFALEELLARVRALLRRKTEQQDNNGNRLTFEDLQLDNESREVVRGGKRLELTAKEF
ELLHLFMQNPKRVLSRDLIMDKIWGYDYSGESNVLEVYIAMLRQKTEQDGGKRLIRTIRGAGYILRGDV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-33 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 9e-33 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PPE_01418 YP_003869796.1 sensory transduction protein BAC0083 Protein 7e-40 49
PPE_01418 YP_003869796.1 sensory transduction protein BAC0308 Protein 6e-37 45
PPE_01418 YP_003869796.1 sensory transduction protein BAC0125 Protein 1e-37 44
PPE_01418 YP_003869796.1 sensory transduction protein HE999704.1.gene1528. Protein 7e-40 43
PPE_01418 YP_003869796.1 sensory transduction protein BAC0197 Protein 3e-33 43
PPE_01418 YP_003869796.1 sensory transduction protein HE999704.1.gene2815. Protein 1e-35 42
PPE_01418 YP_003869796.1 sensory transduction protein NC_010079.5776364.p0 Protein 8e-35 41
PPE_01418 YP_003869796.1 sensory transduction protein NC_002952.2859858.p0 Protein 8e-35 41
PPE_01418 YP_003869796.1 sensory transduction protein NC_007622.3794948.p0 Protein 8e-35 41
PPE_01418 YP_003869796.1 sensory transduction protein NC_003923.1003417.p0 Protein 8e-35 41
PPE_01418 YP_003869796.1 sensory transduction protein NC_013450.8614146.p0 Protein 8e-35 41
PPE_01418 YP_003869796.1 sensory transduction protein NC_002951.3238224.p0 Protein 8e-35 41
PPE_01418 YP_003869796.1 sensory transduction protein NC_007793.3914065.p0 Protein 8e-35 41
PPE_01418 YP_003869796.1 sensory transduction protein NC_002758.1121390.p0 Protein 8e-35 41
PPE_01418 YP_003869796.1 sensory transduction protein AF155139.2.orf0.gene Protein 1e-31 41
PPE_01418 YP_003869796.1 sensory transduction protein NC_002952.2859905.p0 Protein 4e-40 41
PPE_01418 YP_003869796.1 sensory transduction protein BAC0347 Protein 4e-36 41
PPE_01418 YP_003869796.1 sensory transduction protein NC_009641.5332272.p0 Protein 3e-40 41
PPE_01418 YP_003869796.1 sensory transduction protein NC_013450.8614421.p0 Protein 3e-40 41
PPE_01418 YP_003869796.1 sensory transduction protein NC_007793.3914279.p0 Protein 3e-40 41
PPE_01418 YP_003869796.1 sensory transduction protein NC_007622.3794472.p0 Protein 4e-40 41
PPE_01418 YP_003869796.1 sensory transduction protein NC_002745.1124361.p0 Protein 3e-40 41
PPE_01418 YP_003869796.1 sensory transduction protein NC_009782.5559369.p0 Protein 3e-40 41
PPE_01418 YP_003869796.1 sensory transduction protein NC_002951.3237708.p0 Protein 3e-40 41
PPE_01418 YP_003869796.1 sensory transduction protein NC_003923.1003749.p0 Protein 3e-40 41
PPE_01418 YP_003869796.1 sensory transduction protein NC_002758.1121668.p0 Protein 3e-40 41
PPE_01418 YP_003869796.1 sensory transduction protein BAC0638 Protein 5e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PPE_01418 YP_003869796.1 sensory transduction protein VFG1390 Protein 7e-53 54
PPE_01418 YP_003869796.1 sensory transduction protein VFG1389 Protein 6e-38 45
PPE_01418 YP_003869796.1 sensory transduction protein VFG1386 Protein 1e-46 44
PPE_01418 YP_003869796.1 sensory transduction protein VFG0596 Protein 4e-34 42