Gene Information

Name : FB2170_15098 (FB2170_15098)
Accession : YP_003863870.1
Strain : Maribacter sp. HTCC2170
Genome accession: NC_014472
Putative virulence/resistance : Virulence
Product : ATP-dependent Clp protease, ATP-binding subunit ClpC
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0542
EC number : -
Position : 3639938 - 3642487 bp
Length : 2550 bp
Strand : +
Note : -

DNA sequence :
ATGGATGATAATTTTTCACCAAGGGTAAAAGATGTAATTGCATACAGCAAAGAAGAGGCATTGCGATTGGGTCATGATTT
TATTGGCACAGAGCATTTGATGCTTGGACTTTTACGTGATGGAAATGGAAAGGCAATAAGTATTCTAGACGCCTTGGAGG
TTGACTTGGACCACTTACGAAGAAAAGTGGAAATTTTGAGTCCTTCGAATCCCAACCCCAGTGGTGTTCAAAAAGATAAA
AAGAACCTTCACTTGACAAGGCAGGCAGAACGTGCTCTTAAGACTACTTTTCTCGAAGCCAAGCTCTTTCAGAGTTCCTC
AATAAATACAGCTCATTTGTTGTTGTGCATTCTCAGAAATGAAAATGACCCTACAACCAAATTGCTTCACAAACTTAAAG
TTGATTATGATGGGGTAAAAGAACAGTTTAAATTTATGATCACAAGCGATGATGACATCGTTGATTCTCCTACTTCTGAA
TCTTTTCCAAGTGATTCTGATGATACGAATGAAGGAAAAGAAAGTACTTTTGGTTCAACATCTGGACAAAAAGGAAATAA
AAAATCAAAGACCCCTGTTCTTGATAATTTTGGTAGGGATTTAACCATGATGGCAGAGGAGAACAAGTTAGATCCTGTCG
TTGGTCGCGAAAAAGAAATCGAGAGGGTTTCTCAAATATTAAGTAGGCGTAAAAAAAACAATCCGTTATTAATTGGTGAG
CCTGGAGTTGGTAAAAGTGCTATCGCTGAAGGTTTGGCGTTACGTATTATCAACAAAAAGGTATCTAGGATTCTTTACAA
CAAACGTGTAGTTACGTTGGATTTGGCTTCTCTAGTTGCAGGAACAAAATATCGTGGGCAATTCGAGGAACGTATGAAAG
CCGTCATGAACGAATTAGAAAAGAATGATGATGTTATTCTTTTCATTGATGAAATCCATACTATTGTTGGGGCTGGTGGA
GCTACCGGAAGTTTAGATGCGTCAAACATGTTCAAACCAGCTTTGGCCAGAGGTGAGATTCAATGTATTGGAGCTACTAC
CTTAGATGAATACAGACAATATATAGAGAAAGATGGAGCTTTAGAACGTAGGTTCCAAAAGGTAATCGTAGAACCTACAT
CTGTAAGTGAGACGATTGAAATTCTCCAAAATATTAAAGGAAAATATGAGGAGCATCATAATGTAGAGTACACAGATGAT
GCCATTGTTGCATGTGTAAAATTGACCAATAGATATATGACAGATAGATTTCTGCCAGACAAGGCCATCGATGCCTTGGA
TGAAGCAGGATCAAGAGTACATATAGTTAATATGGATGTTCCTAAACAGATTTTGGAGCTTGAAAAACAGCTCGAAGATG
TAAAGGATCTAAAAAACAGCGTGGTCAAAAAACAGAAATATGAAGAGGCCGCGAAGCTGCGCGATGATGAAAAAAGAATA
GAGAAAGAACTTGCTGTTGCCCAAGAAAAATGGGAAGAAGACAGTAAATTACATAAAGAGGTTGTTTCTGAGGATAATGT
CGCCGATGTGGTTTCAATGATGAGTGGAATTCCTGTAAATAGAATAGCACAAACCGAAAGTAACAAACTTGCAGAATTAC
CAGAACTTATTAAATCCAATGTTATTGGACAGGATGAAGCCGTGGCCAAAGTTGCCAAAGCCATTCAACGTAACCGTGCC
GGGCTAAAAGACCCAAACAAACCTATAGGTTCGTTTATTTTCCTCGGTCAAACCGGGGTTGGTAAAACACAACTTGCAAA
AGTCTTGGCAAAAGAGCTTTTTGACTCTGAAGATGCACTTATTCGTATTGATATGAGTGAGTATATGGAGAAATTTGCGA
TTTCTAGATTGGTAGGAGCTCCTCCTGGATATGTTGGGTATGAAGAAGGCGGACAATTAACTGAAAAAGTAAGGCGCAAA
CCTTATTCGGTTATTCTGTTGGATGAAGTCGAAAAAGCGCATCCAGATGTCTTTAATATGATGCTTCAAGTATTGGATGA
CGGTTTCTTAACGGATAGTCTGGGTAGAAAAATTGATTTTAGAAATACGATTATCATTATGACCTCAAATATTGGGGCAA
GACAATTGAAAGATTTTGGCCAAGGAGTAGGTTTTGGTACCGCAGCCAAAAAATCACAGGCCGATAGTCATCAGAAAAGT
GTAATAGAGAATGCTTTGAAGAAAGCATTTGCACCTGAGTTTTTAAATAGAATTGATGATGTTATCGTATTCAACGCTTT
AGAGCGAGAAGACATTCACAAAATCATAGATATTGAGTTAGCAAAGCTTTTTGCCCGTATTAAGGATATAGGGTACAACC
TGAGCCTAACTGATGAAGCCAAGGACTACATAGCTGAAAAAGGCTTTGATAAACAATATGGTGCTAGACCTTTGAAAAGA
GCCATTCAAAAATATATTGAGGATGCTTTGGCAGAGGAAATCGTGAACTCAAAACTTGAAGAGGGAGATAGCATTTTTAT
GGAATTAGACAAAAAGAAAGAAGCCTTGACAATAAAAATAAAAAAAGCTAAAAAGCCTTCTAAAACATAG

Protein sequence :
MDDNFSPRVKDVIAYSKEEALRLGHDFIGTEHLMLGLLRDGNGKAISILDALEVDLDHLRRKVEILSPSNPNPSGVQKDK
KNLHLTRQAERALKTTFLEAKLFQSSSINTAHLLLCILRNENDPTTKLLHKLKVDYDGVKEQFKFMITSDDDIVDSPTSE
SFPSDSDDTNEGKESTFGSTSGQKGNKKSKTPVLDNFGRDLTMMAEENKLDPVVGREKEIERVSQILSRRKKNNPLLIGE
PGVGKSAIAEGLALRIINKKVSRILYNKRVVTLDLASLVAGTKYRGQFEERMKAVMNELEKNDDVILFIDEIHTIVGAGG
ATGSLDASNMFKPALARGEIQCIGATTLDEYRQYIEKDGALERRFQKVIVEPTSVSETIEILQNIKGKYEEHHNVEYTDD
AIVACVKLTNRYMTDRFLPDKAIDALDEAGSRVHIVNMDVPKQILELEKQLEDVKDLKNSVVKKQKYEEAAKLRDDEKRI
EKELAVAQEKWEEDSKLHKEVVSEDNVADVVSMMSGIPVNRIAQTESNKLAELPELIKSNVIGQDEAVAKVAKAIQRNRA
GLKDPNKPIGSFIFLGQTGVGKTQLAKVLAKELFDSEDALIRIDMSEYMEKFAISRLVGAPPGYVGYEEGGQLTEKVRRK
PYSVILLDEVEKAHPDVFNMMLQVLDDGFLTDSLGRKIDFRNTIIIMTSNIGARQLKDFGQGVGFGTAAKKSQADSHQKS
VIENALKKAFAPEFLNRIDDVIVFNALEREDIHKIIDIELAKLFARIKDIGYNLSLTDEAKDYIAEKGFDKQYGARPLKR
AIQKYIEDALAEEIVNSKLEEGDSIFMELDKKKEALTIKIKKAKKPSKT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 0.0 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
FB2170_15098 YP_003863870.1 ATP-dependent Clp protease, ATP-binding subunit ClpC VFG0079 Protein 0.0 50
FB2170_15098 YP_003863870.1 ATP-dependent Clp protease, ATP-binding subunit ClpC VFG0080 Protein 1e-152 48