Gene Information

Name : PB2503_00355 (PB2503_00355)
Accession : YP_003855980.1
Strain : Parvularcula bermudensis HTCC2503
Genome accession: NC_014414
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2874795 - 2875472 bp
Length : 678 bp
Strand : +
Note : -

DNA sequence : 
GTGACACGAATCCTGGTAATCGAAGACGATGAGGAAACCGCTAGCTTCATTGCCAACGGCCTGAAACAGGAAGGTTTCGC
GGTCGATACGGCGAAGACCGGTACGGACGGTCTCTTCCAGGCCACCGAGAGCCCGCCGGACCTCGTCGTCGTGGACAGAA
TGCTGCCGGGTCTTGACGGCGTTTCAGTCATTAAAGCCTTGCGGGCGGCGGGGGTGAAGATCCCCGTCCTTTTCCTGACC
GCCATGGGCGCCGTGGAGGACAGGGTAGCAGGCCTTGAAGCGGGCGGCGACGACTATCTTGTCAAGCCGTTCTCCTTCAT
GGAACTGCGCGCGCGGGTAACCACCCTCCTGCGGCGCCCACCGCTCAAGGACGAAATCACCCGCCTCGAAGCGCGCGGCG
TCACCGTCGATCGGCTGACCCGCCGGGTTACCGCGGGAAGCCAGACCGTCGATCTTCAGCCCCGAGAGTATCAGCTCCTC
GAGTATCTGCTGCTGCATAAGGATCAGATCGTCACGCGAACCATGCTTCTTGAGGAGATCTGGAGCTTTCATTTCGACCC
GGGCACGAACATCGTCGAGACGCATTTGAGCCGTCTGAGGGCCAAGCTGTCCGAGGCTGGCACTTCGGCCCTGATCCGGA
CCGTGCGCGGGGCAGGATACGTGATCGATGCGGATTGA

Protein sequence : 
MTRILVIEDDEETASFIANGLKQEGFAVDTAKTGTDGLFQATESPPDLVVVDRMLPGLDGVSVIKALRAAGVKIPVLFLT
AMGAVEDRVAGLEAGGDDYLVKPFSFMELRARVTTLLRRPPLKDEITRLEARGVTVDRLTRRVTAGSQTVDLQPREYQLL
EYLLLHKDQIVTRTMLLEEIWSFHFDPGTNIVETHLSRLRAKLSEAGTSALIRTVRGAGYVIDAD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 4e-38 44
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-37 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PB2503_00355 YP_003855980.1 DNA-binding response regulator BAC0638 Protein 1e-39 45
PB2503_00355 YP_003855980.1 DNA-binding response regulator BAC0125 Protein 4e-45 44
PB2503_00355 YP_003855980.1 DNA-binding response regulator BAC0308 Protein 7e-44 44
PB2503_00355 YP_003855980.1 DNA-binding response regulator BAC0083 Protein 4e-46 44
PB2503_00355 YP_003855980.1 DNA-binding response regulator BAC0197 Protein 3e-39 42
PB2503_00355 YP_003855980.1 DNA-binding response regulator BAC0347 Protein 7e-41 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PB2503_00355 YP_003855980.1 DNA-binding response regulator VFG1389 Protein 1e-38 45
PB2503_00355 YP_003855980.1 DNA-binding response regulator VFG0596 Protein 1e-38 44
PB2503_00355 YP_003855980.1 DNA-binding response regulator VFG1390 Protein 2e-38 41