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Name : PB2503_08584 (PB2503_08584) Accession : YP_003854914.1 Strain : Parvularcula bermudensis HTCC2503 Genome accession: NC_014414 Putative virulence/resistance : Virulence Product : general secretion pathway protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 1714799 - 1716343 bp Length : 1545 bp Strand : + Note : - DNA sequence : ATGAGCGAAGCGACAGCATCCCCTTCGTCGGATCCGGCTGAGCCGGATATCCGCTTCACCTATGCCTTTGCCAAGGAAAA TGGCCTCATTTTATTGGGGAAAGAGCCTGACGGTCAGTTGGCGATCGGCGCACGGGCAGGGGAAGACGGCAAAACCGCGG CCAGCCCATGGTCCCTGGCGGAGGCTTGGCGGGTGGCCGGTAATCGCGCCCGGATCGATCTCTTGCCGGCCGACATTTTT GAGCGGAAGCTCTCCGAAATCTATTCCGCCGAAGGGCTGACCGCCGCGACCTTCGACGGCGCGGATGATGAAAATGATTT GACCGAGTTGGCCACAGGCCTGCCGACTGCCGCGGATCTTCTCGATACTGAGGATGACGCGCCGATCATCCGGTTGATCA ATGCGTTGATTGCCGAGGCCGTAAAGACCCGTGCCTCGGACATTCACATCGAACCCTATGAGACAGAGCTCTCGATCCGC TTGCGGATTGATGGTGTGTTGCGTGAAGTCCTGTCTTTGCCGCCAAAGCTCACGCCCGTTCTGACGAGCCGCATCAAGGT GATGGCCCGCCTCGATATTGCCGAAAGCCGAGTGCCGCAGGACGGCCGGATCAGCGTCGCCCTCGCCGGGCGTCTTGTGG ATGTCCGCGTCTCGACGCTGCCCTCCCGGTTTGGAGAGCGCATCGTGATGCGGTTGCTCGACAAGGCGCAGGCCAAGCTC GATCTCGACACGCTCGGCATGCCGCCCGACATTCTCAATCGGTTCAAAGGCTTGATCGGTCGGCCGAATGGCATCGTTCT GGTTACCGGCCCCACGGGGTCGGGCAAGACCACCACGCTCTATGCCGGGCTCACCCTCCTCAACAATCCAGGGCGCAATA TCCTGACCGTTGAGGATCCTGTCGAATATGCCCTCGATGGGGTTGGTCAGACCCAGGTGAACGCTAAAGTGGGGATGACC TTCGCCACGGGGTTGCGCGCGATCCTTCGTCAGGACCCTGATATTGTCATGGTCGGCGAGATCCGCGATGTGGAAACGGG CCAAATTGCGGTCCAGGCGTCTCTGACCGGCCATTTGGTGCTGTCGACGGTGCACACCAATTCCGCCGTCGGTGCGATTA CCCGCCTTAAGGATATGGGGGTTGAGCCGTTCCTTTTGTCCTCAACGCTCGCCGGGGTTCTTGCGCAGCGCCTTGTGCGC CGATTGTGCGAAGCCTGTAAGACACCCTACACAGCCTCACCTGCCGATCTTGAGCTTCTCGGACAGCCGAGCGGGGCCGA CGAGGTCACGCTTTACCAACCGGTCGGGTGTGCCCGGTGCGGCGGTGTTGGCTTTGAAGGGCGGATCGGCATCTATGAGC TGATTGTGGCGGATGAGACCTTCAAATCCATGGTGCATGACGATGCTTCGGAACAGGAGATCGCCGCCCATGTCTTCACT GACCACCCGACCCTGGCGCAAAGCGGGTTTGCTCACGTTCTTGCCGGTCGGACTTCCCTGCAGGAGGTGCTTCGCGTGGT GAAGGAGGGAGACCTCGCCCTGTGA Protein sequence : MSEATASPSSDPAEPDIRFTYAFAKENGLILLGKEPDGQLAIGARAGEDGKTAASPWSLAEAWRVAGNRARIDLLPADIF ERKLSEIYSAEGLTAATFDGADDENDLTELATGLPTAADLLDTEDDAPIIRLINALIAEAVKTRASDIHIEPYETELSIR LRIDGVLREVLSLPPKLTPVLTSRIKVMARLDIAESRVPQDGRISVALAGRLVDVRVSTLPSRFGERIVMRLLDKAQAKL DLDTLGMPPDILNRFKGLIGRPNGIVLVTGPTGSGKTTTLYAGLTLLNNPGRNILTVEDPVEYALDGVGQTQVNAKVGMT FATGLRAILRQDPDIVMVGEIRDVETGQIAVQASLTGHLVLSTVHTNSAVGAITRLKDMGVEPFLLSSTLAGVLAQRLVR RLCEACKTPYTASPADLELLGQPSGADEVTLYQPVGCARCGGVGFEGRIGIYELIVADETFKSMVHDDASEQEIAAHVFT DHPTLAQSGFAHVLAGRTSLQEVLRVVKEGDLAL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 3e-107 | 59 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 2e-107 | 59 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PB2503_08584 | YP_003854914.1 | general secretion pathway protein E | VFG2048 | Protein | 7e-108 | 59 |
| PB2503_08584 | YP_003854914.1 | general secretion pathway protein E | VFG0182 | Protein | 2e-108 | 56 |
| PB2503_08584 | YP_003854914.1 | general secretion pathway protein E | VFG1876 | Protein | 9e-115 | 52 |
| PB2503_08584 | YP_003854914.1 | general secretion pathway protein E | VFG2426 | Protein | 3e-71 | 48 |
