Gene Information

Name : PB2503_08144 (PB2503_08144)
Accession : YP_003854826.1
Strain : Parvularcula bermudensis HTCC2503
Genome accession: NC_014414
Putative virulence/resistance : Virulence
Product : two component response regulatorT
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1611288 - 1611965 bp
Length : 678 bp
Strand : +
Note : -

DNA sequence : 
ATGAAGATATTGGTTGTCGAGGACGATGCCGACGCGGCGAAATTCTTGATCAAGGGATTGCGCGAAGCGGGACATGCGGT
CGACCATGCCTTGGATGGTGATACCGGGAAAAACATGGCCGAGAGTGGCGGATACGATGCCTATGTGATCGACCGTATGC
TGCCCGGTATTGATGGGCTCACCATGCTTGAAATGCGTCGATCCGCGGGGGATCAGACACCGGCCTTGTTTCTGTCCGCT
CTCGGAGAGGTCGATGACCGGGTTGCGGGATTGAAGGCGGGGGGGGACGATTATCTCGTTAAGCCCTATGCGTTCTCCGA
ACTCATTGCTCGGGTCGAAGCCTTGGGCCGACGCCGGGGGCCGACGAATATTCAAACCACCTTTACGGTGGGTGATCTTG
AAATGGATGTCCTGACCCGAACGGTCCGACGGGCGGGAAAGAAAGTCGACCTTCAGCCGCGAGAATTCAGATTACTCGAA
TATCTCATCCGGCATTCCGACCAGGTCGTGACCCGTACGATGTTGCTTGAAAATGTCTGGGAATATCACTTCGACCCCCA
GACGAACGTCATCGATGTGCATATCTCTCGATTGCGCTCGAAAATCGATCGCGACTTCGACAAGCCGCTCCTGAAAACCG
TGCGGGGGGCGGGCTATACACTGACCGACGAAGACTAG

Protein sequence : 
MKILVVEDDADAAKFLIKGLREAGHAVDHALDGDTGKNMAESGGYDAYVIDRMLPGIDGLTMLEMRRSAGDQTPALFLSA
LGEVDDRVAGLKAGGDDYLVKPYAFSELIARVEALGRRRGPTNIQTTFTVGDLEMDVLTRTVRRAGKKVDLQPREFRLLE
YLIRHSDQVVTRTMLLENVWEYHFDPQTNVIDVHISRLRSKIDRDFDKPLLKTVRGAGYTLTDED

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 8e-41 45
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-40 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PB2503_08144 YP_003854826.1 two component response regulatorT BAC0347 Protein 4e-48 48
PB2503_08144 YP_003854826.1 two component response regulatorT BAC0111 Protein 2e-52 48
PB2503_08144 YP_003854826.1 two component response regulatorT BAC0125 Protein 4e-47 47
PB2503_08144 YP_003854826.1 two component response regulatorT BAC0083 Protein 2e-51 47
PB2503_08144 YP_003854826.1 two component response regulatorT BAC0638 Protein 4e-42 46
PB2503_08144 YP_003854826.1 two component response regulatorT BAC0197 Protein 3e-43 46
PB2503_08144 YP_003854826.1 two component response regulatorT BAC0308 Protein 2e-44 45
PB2503_08144 YP_003854826.1 two component response regulatorT NC_002516.2.879194.p Protein 3e-28 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PB2503_08144 YP_003854826.1 two component response regulatorT VFG1389 Protein 9e-37 47
PB2503_08144 YP_003854826.1 two component response regulatorT VFG0596 Protein 3e-41 45
PB2503_08144 YP_003854826.1 two component response regulatorT VFG1390 Protein 3e-36 42